RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PGAP3Q96FM1 320 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 FAM46AQ96IP4 442 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TSPAN10Q9H1Z9 355 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ACTL8Q9H568 366 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ARNT2Q9HBZ2 717 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SLC22A7Q9Y694 548 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 MYO10Q9HD67 2058 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 J3QLW9 94 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 NFKBIEO00221 500 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SCAMP2O15127 329 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ACSM4P0C7M7 580 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF19P17023 458 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 HOXA10P31260 410 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OR12D2P58182 307 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SLAMF1Q13291 335 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 COX19Q49B96 90 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SAXO2Q658L1 398 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ETV3LQ6ZN32 361 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 RNF44Q7L0R7 432 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OR2T4Q8NH00 348 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 HASPINQ8TF76 798 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OSMRQ99650 979 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF559Q9BR84 538 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PINK1Q9BXM7 581 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PLEKHA2Q9HB19 425 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ZCCHC3Q9NUD5 404 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 BABAM2Q9NXR7 383 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PCDHB9Q9Y5E1 797 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 LOC100509620A0A075B734 347 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 GPR89AB7ZAQ6 455 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TISP43B9A030 160 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 KHNYNO15037 678 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 BCHEP06276 602 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 GPR89BP0CG08 455 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 GAAP10253 952 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CCKARP32238 428 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 HMGCS2P54868 508 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TRA2BP62995 288 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ZC3H14Q6PJT7 736 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SYT13Q7L8C5 426 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 C11orf96Q7Z7L8 435 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 THOC6Q86W42 341 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SERPINA9Q86WD7 417 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PPP1R3BQ86XI6 285 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ZFPM2Q8WW38 1151 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TFAP2BQ92481 460 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 COQ8BQ96D53 544 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PARK7Q99497 189 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CRB3Q9BUF7 120 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 C20orf85Q9H1P6 137 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 KLF15Q9UIH9 416 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 FAM96BQ9Y3D0 163 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 BCL9O00512 1426 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 LOC105369274A0A096LPK9 316 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 IGKV6D-41A0A0C4DH26 115 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM82A0PJX8 343 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PRRG1O14668 218 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CNR2P34972 360 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 GCGRP47871 477 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 MFGE8Q08431 387 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ATXN7L3Q14CW9 347 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CTF1Q16619 201 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CEACAM20Q6UY09 585 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OR4N4Q8N0Y3 316 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 RASGEF1AQ8N9B8 481 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 MTFMTQ96DP5 389 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TTPALQ9BTX7 342 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SLC6A20Q9NP91 592 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PURGQ9UJV8 347 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PCTPQ9UKL6 214 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF705GA8MUZ8 300 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 BCL2L11O43521 198 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 NUDT21O43809 227 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 NAT2P11245 290 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 RPA2P15927 270 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CX3CR1P49238 355 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 RNLSQ5VYX0 342 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 C14orf80Q86SX3 495 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM150AQ86TG1 271 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ARFGAP1Q8N6T3 406 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 DUSP18Q8NEJ0 188 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OR13C2Q8NGS9 318 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 GPR148Q8TDV2 347 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 DNASE1L2Q92874 299 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 GSTO2Q9H4Y5 243 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF586Q9NXT0 402 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SYT5O00445 386 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CTDSP2O14595 271 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 NRG3P56975 720 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 RPL23AP62750 156 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF91Q05481 1191 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 GUK1Q16774 197 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 MOGAT2Q3SYC2 334 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OVCH1Q7RTY7 1134 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TMPRSS12Q86WS5 348 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 AUTS2Q8WXX7 1259 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 UCN3Q969E3 161 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 BMFQ96LC9 184 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 NTMT1Q9BV86 223 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 WWTR1Q9GZV5 400 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms