RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MIER2Q8N344 545 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 FAM110BQ8TC76 370 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 MAGED4Q96JG8 741 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 BTBD2Q9BX70 525 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 UBQLN3Q9H347 655 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 RABEP2Q9H5N1 569 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 CXorf36Q9H7Y0 433 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 GPATCH2Q9NW75 528 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 FAF1Q9UNN5 650 aaPredicted RBP16.74■□□□□ 0.27
CLN3-259ENST00000637551 SLC5A6Q9Y289 635 aa16.74■□□□□ 0.27
CLN3-259ENST00000637551 MRPS18CQ9Y3D5 142 aaKnown RBP16.74■□□□□ 0.27
CLN3-259ENST00000637551 A0A0G2JMM0 328 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 A0A1W2PPB8 328 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 A0A1W2PRS3 328 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 KIR3DP1A8MWS1 328 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 NPIPA5E9PKD4 350 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 SNPHO15079 494 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 SLC19A2O60779 497 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 UQCRC2P22695 453 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 DNASE1L1P49184 302 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 CLK3P49761 638 aaKnown RBP16.73■□□□□ 0.27
CLN3-259ENST00000637551 IDH3AP50213 366 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 MRPL49Q13405 166 aaKnown RBP16.73■□□□□ 0.27
CLN3-259ENST00000637551 GAB1Q13480 694 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 TP53BP2Q13625 1128 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 METTL21CQ5VZV1 264 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 HIST2H2BCQ6DN03 193 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 TMEM251Q8N6I4 163 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 OR52B2Q96RD2 323 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 ADOQ96SZ5 270 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 SDHAF3Q9NRP4 125 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 KLRF1Q9NZS2 232 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 NPIPA1Q9UND3 350 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 TRIM33Q9UPN9 1127 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 C15orf41Q9Y2V0 281 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 WIF1Q9Y5W5 379 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 SNX8Q9Y5X2 465 aa16.73■□□□□ 0.27
CLN3-259ENST00000637551 PINLYPA6NC86 204 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 AQP7O14520 342 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 CFLARO15519 480 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 HPNP05981 417 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 ZCCHC18P0CG32 403 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 ENDOUP21128 410 aaKnown RBP16.72■□□□□ 0.27
CLN3-259ENST00000637551 GABRA3P34903 492 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 EVI2BP34910 448 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 CA7P43166 264 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 MASP1P48740 699 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 ST13P50502 369 aaKnown RBP16.72■□□□□ 0.27
CLN3-259ENST00000637551 ANXA11P50995 505 aaKnown RBP16.72■□□□□ 0.27
CLN3-259ENST00000637551 AQP5P55064 265 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 UFM1P61960 85 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 RCAN2Q14206 197 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 SLC10A1Q14973 349 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 SPDYE7PQ495Y7 208 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 PRAMEF20Q5VT98 475 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 FNDC7Q5VTL7 733 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 SPPL2CQ8IUH8 684 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 MISPQ8IVT2 679 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 PRR22Q8IZ63 422 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 SLC16A11Q8NCK7 471 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 GPR151Q8TDV0 419 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 NEURL3Q96EH8 262 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 RMND5AQ9H871 391 aa16.72■□□□□ 0.27
CLN3-259ENST00000637551 IGLV3-32A0A0A0MS00 114 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 A0A1W2PQD3 144 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 FAM234BA2RU67 622 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 WIPF3A6NGB9 483 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 BCKDKO14874 412 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 FADS1O60427 444 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 ICOSLGO75144 302 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 CBR3O75828 277 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 HOXD4P09016 255 aaPredicted RBP16.71■□□□□ 0.27
CLN3-259ENST00000637551 ACP2P11117 423 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 PTGDSP41222 190 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 MAN2A2P49641 1150 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 PHC1P78364 1004 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 POU6F2P78424 691 aaPredicted RBP16.71■□□□□ 0.27
CLN3-259ENST00000637551 GANABQ14697 944 aaKnown RBP16.71■□□□□ 0.27
CLN3-259ENST00000637551 LASP1Q14847 261 aaKnown RBP16.71■□□□□ 0.27
CLN3-259ENST00000637551 TRILQ7L0X0 811 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 SZRD1Q7Z422 152 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 CHERPQ8IWX8 916 aaKnown RBP16.71■□□□□ 0.27
CLN3-259ENST00000637551 COX18Q8N8Q8 333 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 OR4A15Q8NGL6 344 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 OR5M3Q8NGP4 307 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 OR1J4Q8NGS1 313 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 ADAMTS15Q8TE58 950 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 TEX37Q96LM6 180 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 PHF12Q96QT6 1004 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 OR52E6Q96RD3 313 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 NODALQ96S42 347 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 HOXD1Q9GZZ0 328 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 EQTNQ9NQ60 294 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 POLE3Q9NRF9 147 aa16.71■□□□□ 0.27
CLN3-259ENST00000637551 CACNA1DQ01668 2161 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 RNF103-CHMP3A0A140T963 221 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 ALG1L2C9J202 215 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 DYNC1I1O14576 645 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 PRRG2O14669 202 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 KCNK2O95069 426 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms