RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ZNF354BQ96LW1 612 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 CRB3Q9BUF7 120 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 SPATA5L1Q9BVQ7 753 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 AMBRA1Q9C0C7 1298 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 CNOT11Q9UKZ1 510 aaKnown RBP13.22□□□□□ -0.29
USP39-220ENST00000613444 DTNAQ9Y4J8 743 aa13.22□□□□□ -0.29
USP39-220ENST00000613444 TTC36A6NLP5 189 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 PDLIM1O00151 329 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 UMODP07911 640 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 CSRP1P21291 193 aaKnown RBP13.21□□□□□ -0.29
USP39-220ENST00000613444 PIGAP37287 484 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 AQP4P55087 323 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 HPCAP84074 193 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 MAPK14Q16539 360 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 OR2T5Q6IEZ7 315 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 VRK2Q86Y07 508 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 CATSPER1Q8NEC5 780 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 OR2T29Q8NH02 315 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 WDR36Q8NI36 951 aaKnown RBP13.21□□□□□ -0.29
USP39-220ENST00000613444 VPS50Q96JG6 964 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 ART5Q96L15 291 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 VCX3BQ9H321 246 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 FOXJ2Q9P0K8 574 aa13.21□□□□□ -0.29
USP39-220ENST00000613444 AGAP5A6NIR3 686 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 SAGE2PA6NJ88 616 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 PRKNO60260 465 aaPredicted RBP13.21□□□□□ -0.3
USP39-220ENST00000613444 LGI1O95970 557 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 ALPPP05187 535 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 PPICP45877 212 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 KCNC4Q03721 635 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 EBPQ15125 230 aaKnown RBP13.21□□□□□ -0.3
USP39-220ENST00000613444 NNATQ16517 81 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 C3orf38Q5JPI3 329 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 PPP4R4Q6NUP7 873 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 TBPL2Q6SJ96 375 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 LACC1Q8IV20 430 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 CACTIN-AS1Q8N1I8 211 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 ZNF619Q8N2I2 560 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 APCDD1LQ8NCL9 501 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 ZNF300Q96RE9 604 aaPredicted RBP13.21□□□□□ -0.3
USP39-220ENST00000613444 ZNF184Q99676 751 aaPredicted RBP13.21□□□□□ -0.3
USP39-220ENST00000613444 PINK1Q9BXM7 581 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 SEMA4CQ9C0C4 833 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 POLE3Q9NRF9 147 aa13.21□□□□□ -0.3
USP39-220ENST00000613444 GPN3Q9UHW5 284 aaPredicted RBP13.21□□□□□ -0.3
USP39-220ENST00000613444 ZNF223Q9UK11 482 aaPredicted RBP13.21□□□□□ -0.3
USP39-220ENST00000613444 MAGED1Q9Y5V3 778 aaPredicted RBP13.21□□□□□ -0.3
USP39-220ENST00000613444 EXPH5Q8NEV8 1989 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 PRKAR1BP31321 381 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 PPP1R8Q12972 351 aaKnown RBP13.2□□□□□ -0.3
USP39-220ENST00000613444 GPR68Q15743 365 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 ZNF311Q5JNZ3 666 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 DHRS4L2Q6PKH6 230 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 ZBTB49Q6ZSB9 765 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 CPEB2Q7Z5Q1 589 aaKnown RBP13.2□□□□□ -0.3
USP39-220ENST00000613444 RBM45Q8IUH3 476 aaKnown RBP13.2□□□□□ -0.3
USP39-220ENST00000613444 CBR4Q8N4T8 237 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 OR52P1PQ8NH57 321 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 METTL21AQ8WXB1 218 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 PROX1Q92786 737 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 PMM1Q92871 262 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 LMF1Q96S06 567 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 NXF5Q9H1B4 397 aaKnown RBP13.2□□□□□ -0.3
USP39-220ENST00000613444 Q9N2J8 555 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 CFL2Q9Y281 166 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 C15orf41Q9Y2V0 281 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 ENPP4Q9Y6X5 453 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 PTPRZ1P23471 2315 aaPredicted RBP13.2□□□□□ -0.3
USP39-220ENST00000613444 LOC102723996A0A087X1L8 192 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 C9J4A7 227 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 J3KTA2 159 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 SYT5O00445 386 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 PEX12O00623 359 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 UGT2B17O75795 530 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 DRD5P21918 477 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 FUT4P22083 530 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 DCTP40126 519 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 TARDBPQ13148 414 aaKnown RBP eCLIP13.2□□□□□ -0.3
USP39-220ENST00000613444 TCTN3Q6NUS6 607 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 C6orf15Q6UXA7 325 aaPredicted RBP13.2□□□□□ -0.3
USP39-220ENST00000613444 ZNF605Q86T29 641 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 CARM1Q86X55 608 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 CLIP4Q8N3C7 705 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 GALNT4Q8N4A0 578 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 BCORP1Q8N888 145 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 ZNF441Q8N8Z8 693 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 B3GNT7Q8NFL0 401 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 OR2Y1Q8NGV0 311 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 DNAJC9Q8WXX5 260 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 C8orf44Q96CB5 159 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 C9orf16Q9BUW7 83 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 PADI1Q9ULC6 663 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 CBLCQ9ULV8 474 aa13.2□□□□□ -0.3
USP39-220ENST00000613444 ZNF443Q9Y2A4 671 aaPredicted RBP13.2□□□□□ -0.3
USP39-220ENST00000613444 FREM2Q5SZK8 3169 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 NPIPA5A0A0B4J1W7 369 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 C7orf72A4D263 438 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 CLDN24A6NM45 220 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 NPIPA7E9PJI5 369 aa13.19□□□□□ -0.3
USP39-220ENST00000613444 NPIPB9F8W1W9 429 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms