RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 TRAF4Q9BUZ4 470 aaPredicted RBP9.06□□□□□ -0.96
TRIM28-210ENST00000597618 HDHD5Q9BXW7 423 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 GRIP2Q9C0E4 1043 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 NMRAL1Q9HBL8 299 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 SAYSD1Q9NPB0 183 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 SDHAF3Q9NRP4 125 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 GLRX2Q9NS18 164 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 PAQR5Q9NXK6 330 aaPredicted RBP9.06□□□□□ -0.96
TRIM28-210ENST00000597618 AHSPQ9NZD4 102 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 STOML1Q9UBI4 398 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 GDF2Q9UK05 429 aaPredicted RBP9.06□□□□□ -0.96
TRIM28-210ENST00000597618 CES1P1Q9UKY3 287 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 PSME2Q9UL46 239 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 MCTS1Q9ULC4 181 aaKnown RBP9.06□□□□□ -0.96
TRIM28-210ENST00000597618 CLEC4AQ9UMR7 237 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 ABCG2Q9UNQ0 655 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 JRKLQ9Y4A0 524 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 ZNF780BQ9Y6R6 833 aa9.06□□□□□ -0.96
TRIM28-210ENST00000597618 FAM234BA2RU67 622 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 UBFD1O14562 309 aaKnown RBP9.05□□□□□ -0.96
TRIM28-210ENST00000597618 SCO2O43819 266 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 SSX4O60224 188 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 PIAS1O75925 651 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 PYGBP11216 843 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 EIF1AXP47813 144 aaKnown RBP9.05□□□□□ -0.96
TRIM28-210ENST00000597618 SLC6A8P48029 635 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 PIK3CGP48736 1102 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 PNLIPRP2P54317 469 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 MRPS35P82673 323 aaKnown RBP9.05□□□□□ -0.96
TRIM28-210ENST00000597618 PDIA2Q13087 525 aaKnown RBP9.05□□□□□ -0.96
TRIM28-210ENST00000597618 FASTKD3Q14CZ7 662 aaKnown RBP9.05□□□□□ -0.96
TRIM28-210ENST00000597618 LTB4RQ15722 352 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.05□□□□□ -0.96
TRIM28-210ENST00000597618 ERCC6LQ2NKX8 1250 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 GLYR1Q49A26 553 aaPredicted RBP9.05□□□□□ -0.96
TRIM28-210ENST00000597618 RAPH1Q70E73 1250 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 TBC1D1Q86TI0 1168 aaPredicted RBP9.05□□□□□ -0.96
TRIM28-210ENST00000597618 GGNQ86UU5 652 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 DTX2Q86UW9 622 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 EXOC3L1Q86VI1 746 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 L3MBTL4Q8NA19 623 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 KBTBD8Q8NFY9 601 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 OR10H5Q8NGA6 315 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 OR52B6Q8NGF0 335 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 OR5M1Q8NGP8 315 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 ZNF675Q8TD23 568 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 TRPC4APQ8TEL6 797 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 HSD17B8Q92506 261 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 NEUROG1Q92886 237 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 EFHD2Q96C19 240 aaPredicted RBP9.05□□□□□ -0.96
TRIM28-210ENST00000597618 C1GALT1C1Q96EU7 318 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 VSTM2LQ96N03 204 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 RBBP8Q99708 897 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 CPNE1Q99829 537 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 TRIM2Q9C040 744 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 DDX47Q9H0S4 455 aaKnown RBP9.05□□□□□ -0.96
TRIM28-210ENST00000597618 IPPKQ9H8X2 491 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 MED11Q9P086 117 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 RNF11Q9Y3C5 154 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 MGAM2Q2M2H8 2515 aa9.05□□□□□ -0.96
TRIM28-210ENST00000597618 ELOA3DA6NLF2 546 aaPredicted RBP9.04□□□□□ -0.96
TRIM28-210ENST00000597618 E7ESA3 106 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 EIF1AYO14602 144 aaKnown RBP9.04□□□□□ -0.96
TRIM28-210ENST00000597618 CLDN9O95484 217 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 TUBBP07437 444 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 LTA4HP09960 611 aaKnown RBP9.04□□□□□ -0.96
TRIM28-210ENST00000597618 GFAPP14136 432 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 SLC25A16P16260 332 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 ZNF16P17020 682 aaPredicted RBP9.04□□□□□ -0.96
TRIM28-210ENST00000597618 IL32P24001 234 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 ADH6P28332 368 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 GP5P40197 560 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 DUSP2Q05923 314 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 DLG1Q12959 904 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 STX5Q13190 355 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 GTF2H2Q13888 395 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 ELOA3BQ3SY89 546 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 ZNF628Q5EBL2 1059 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 FRG2Q64ET8 278 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 CYB5R2Q6BCY4 276 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 GTF2H2CQ6P1K8 395 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 FIGNL1Q6PIW4 674 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 NPSR1Q6W5P4 371 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 GOLGA7Q7Z5G4 137 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 METTL4Q8N3J2 472 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 ELOA3Q8NG57 546 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 UHMK1Q8TAS1 419 aaKnown RBP9.04□□□□□ -0.96
TRIM28-210ENST00000597618 CNRIP1Q96F85 164 aaPredicted RBP9.04□□□□□ -0.96
TRIM28-210ENST00000597618 ADAD1Q96M93 576 aaKnown RBP9.04□□□□□ -0.96
TRIM28-210ENST00000597618 FRG2BQ96QU4 278 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 USB1Q9BQ65 265 aaKnown RBP9.04□□□□□ -0.96
TRIM28-210ENST00000597618 FAIM2Q9BWQ8 316 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 MRPL1Q9BYD6 325 aaKnown RBP9.04□□□□□ -0.96
TRIM28-210ENST00000597618 FOLH1BQ9HBA9 442 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 XPR1Q9UBH6 696 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 ACOT9Q9Y305 439 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 OR10H1Q9Y4A9 318 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 PRR14LQ5THK1 2151 aa9.04□□□□□ -0.96
TRIM28-210ENST00000597618 CCDC189A1A4V9 331 aa9.03□□□□□ -0.96
TRIM28-210ENST00000597618 CXorf49A8MYA2 514 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms