RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 DOCK9Q9BZ29 2069 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 PIP5K1CO60331 668 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 SLC3A1Q07837 685 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 EIF2B5Q13144 721 aaKnown RBP14.34□□□□□ -0.11
UPF1-204ENST00000596842 OR6C4Q8NGE1 309 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 CXorf40AQ8TE69 158 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 ENTPD4Q9Y227 616 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 CACNA1IQ9P0X4 2223 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 PRODHO43272 600 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 SOD1P00441 154 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 MC3RP41968 323 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 ID2Q02363 134 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 TEKQ02763 1124 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 ELOAQ14241 798 aaKnown RBP14.33□□□□□ -0.11
UPF1-204ENST00000596842 LTB4RQ15722 352 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 RASSF6Q6ZTQ3 369 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 CHMP1BQ7LBR1 199 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 DCUN1D3Q8IWE4 304 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 OR10H4Q8NGA5 316 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 ZFP3Q96NJ6 502 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 CLEC4MQ9H2X3 399 aaPredicted RBP14.33□□□□□ -0.11
UPF1-204ENST00000596842 RHBGQ9H310 441 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 CREBZFQ9NS37 354 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 ING3Q9NXR8 418 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 NKIRAS2Q9NYR9 191 aa14.33□□□□□ -0.11
UPF1-204ENST00000596842 A0A0G2JMP0 313 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 A0A0X1KG70 313 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 CPEP16870 476 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 TRIM23P36406 574 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 BLVRAP53004 296 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 ASAH1Q13510 395 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 CPOQ8IVL8 374 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 OR4M2Q8NGB6 313 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 AP1M2Q9Y6Q5 423 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 SHISA3A0PJX4 238 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 PRRT4C9JH25 899 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 INMT-MINDY4F8WBC2 141 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 GABRPO00591 440 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 FCMRO60667 390 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 PAHP00439 452 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 SLC1A3P43003 542 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 ERVFC1P60507 584 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 PUDPQ08623 228 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 DHCR24Q15392 516 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 BCL2L15Q5TBC7 163 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 FAM122CQ6P4D5 195 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 ARSKQ6UWY0 536 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 CFAP77Q6ZQR2 320 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 IKBIPQ70UQ0 350 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 FAM26EQ8N5C1 309 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 AMDHD1Q96NU7 426 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 ISG20L2Q9H9L3 353 aaKnown RBP14.33□□□□□ -0.12
UPF1-204ENST00000596842 SEMA4GQ9NTN9 838 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 NPAP1Q9NZP6 1156 aa14.33□□□□□ -0.12
UPF1-204ENST00000596842 A8MVJ9 347 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 LIMS3P0CW19 117 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 LIMS4P0CW20 117 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 ACP2P11117 423 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 RPL6Q02878 288 aaKnown RBP14.32□□□□□ -0.12
UPF1-204ENST00000596842 TGM3Q08188 693 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 FAPQ12884 760 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 PLBD1Q6P4A8 553 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 SAMD12Q8N8I0 201 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 OR9A2Q8NGT5 310 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 TMEM163Q8TC26 289 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 UPRTQ96BW1 309 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 QRFPRQ96P65 431 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 EVA1BQ9NVM1 165 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 ATG4BQ9Y4P1 393 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 CIB4A0PJX0 185 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 TBC1D3BA6NDS4 549 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 CERS1P27544 350 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 CCNJQ5T5M9 372 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 OR4C11Q6IEV9 310 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 APOBEC4Q8WW27 367 aaKnown RBP14.32□□□□□ -0.12
UPF1-204ENST00000596842 SMG7Q92540 1137 aaKnown RBP14.32□□□□□ -0.12
UPF1-204ENST00000596842 TMEM245Q9H330 911 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 MAN2C1Q9NTJ4 1040 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 ALPK3Q96L96 1907 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 IGLON5A6NGN9 336 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 EEF1E1O43324 174 aaKnown RBP14.32□□□□□ -0.12
UPF1-204ENST00000596842 POLR2CP19387 275 aaPredicted RBP14.32□□□□□ -0.12
UPF1-204ENST00000596842 ACVR1BP36896 505 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 SRP9P49458 86 aaKnown RBP14.32□□□□□ -0.12
UPF1-204ENST00000596842 GDI2P50395 445 aaKnown RBP14.32□□□□□ -0.12
UPF1-204ENST00000596842 DUSP2Q05923 314 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 SLC9A5Q14940 896 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 OCLNQ16625 522 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 HCAR2Q8TDS4 363 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 SAMD8Q96LT4 415 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 PPIL3Q9H2H8 161 aaKnown RBP14.32□□□□□ -0.12
UPF1-204ENST00000596842 SAGE1Q9NXZ1 904 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 TNFRSF10DQ9UBN6 386 aa14.32□□□□□ -0.12
UPF1-204ENST00000596842 PAK4O96013 591 aaPredicted RBP14.31□□□□□ -0.12
UPF1-204ENST00000596842 PRNPP04156 253 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 SYPP08247 313 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 ADRB3P13945 408 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 ZSWIM7Q19AV6 140 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 C6orf132Q5T0Z8 1188 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 ZNF793Q6ZN11 406 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms