RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SLC28A1O00337 649 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 AZIN1O14977 448 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 SCO2O43819 266 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 TMIGD3P0DMS9 266 aaPredicted RBP18.56■□□□□ 0.56
SHMT1-209ENST00000582653 CD99P14209 185 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 NTSP30990 170 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 SRD5A2P31213 254 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 SORDQ00796 357 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 FOXF2Q12947 444 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 ZNF551Q7Z340 670 aaPredicted RBP18.56■□□□□ 0.56
SHMT1-209ENST00000582653 OR2L13Q8N349 312 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 CHDHQ8NE62 594 aaPredicted RBP18.56■□□□□ 0.56
SHMT1-209ENST00000582653 WNT2BQ93097 391 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 DTNBP1Q96EV8 351 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 ZFP3Q96NJ6 502 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 TM9SF2Q99805 663 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 G6PC3Q9BUM1 346 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 LRTM1Q9HBL6 345 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 C1orf109Q9NX04 203 aa18.56■□□□□ 0.56
SHMT1-209ENST00000582653 WBP11Q9Y2W2 641 aaKnown RBP18.56■□□□□ 0.56
SHMT1-209ENST00000582653 MED12Q93074 2177 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 RGS14O43566 566 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 ZIC3O60481 467 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 TRIM13O60858 407 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 PSMG1O95456 288 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 LINC00032P0C843 101 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 PRPH2P23942 346 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 DNASE1P24855 282 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 LHX2P50458 406 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 DGKQP52824 942 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 RFTN2Q52LD8 501 aaPredicted RBP18.55■□□□□ 0.56
SHMT1-209ENST00000582653 AAGABQ6PD74 315 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 IKBIPQ70UQ0 350 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 LINC01560Q8TB33 94 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.55■□□□□ 0.56
SHMT1-209ENST00000582653 CIDECQ96AQ7 238 aaPredicted RBP18.55■□□□□ 0.56
SHMT1-209ENST00000582653 RTN4RQ9BZR6 473 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 DSN1Q9H410 356 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 BAIAP2L1Q9UHR4 511 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 DKKL1Q9UK85 242 aa18.55■□□□□ 0.56
SHMT1-209ENST00000582653 CLCA1A8K7I4 914 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 TMEM233B4DJY2 109 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 EEF1E1-BLOC1S5C9J1V9 151 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 EEF1E1O43324 174 aaKnown RBP18.54■□□□□ 0.56
SHMT1-209ENST00000582653 AKAP10O43572 662 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 FADS1O60427 444 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 SLITRK5O94991 958 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 CHRNGP07510 517 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 CHMP24386 653 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 DPP4P27487 766 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 ALDH3A1P30838 453 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 EVI2BP34910 448 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 RFX3P48380 749 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 EEF1A1P68104 462 aaKnown RBP18.54■□□□□ 0.56
SHMT1-209ENST00000582653 HSPB3Q12988 150 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 CYP27C1Q4G0S4 372 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 ZNF385BQ569K4 471 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 EEF1A1P5Q5VTE0 462 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 TGIF2LYQ8IUE0 185 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 BANPQ8N9N5 519 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 CLHC1Q8NHS4 586 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 SFXN2Q96NB2 322 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 TSSK3Q96PN8 268 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 MECRQ9BV79 373 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 SFXN3Q9BWM7 321 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 MED11Q9P086 117 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 PPP4R1LQ9P1A2 415 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 SLC17A7Q9P2U7 560 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 MID2Q9UJV3 735 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 DNAJC15Q9Y5T4 150 aa18.54■□□□□ 0.56
SHMT1-209ENST00000582653 C2CD3Q4AC94 2353 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 ITPR3Q14573 2671 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 GXYLT2A0PJZ3 443 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 NPIPB8E9PQR5 432 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 SPAG7O75391 227 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 GOSR1O95249 250 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 SDC1P18827 310 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 VSNL1P62760 191 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 RPL38P63173 70 aaKnown RBP18.53■□□□□ 0.56
SHMT1-209ENST00000582653 MRPS22P82650 360 aaKnown RBP18.53■□□□□ 0.56
SHMT1-209ENST00000582653 STX5Q13190 355 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 BCL2A1Q16548 175 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 DECR1Q16698 335 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 KANK2Q63ZY3 851 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 CAMKMTQ7Z624 323 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 TRABD2AQ86V40 505 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 OR2M3Q8NG83 312 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 OR4K17Q8NGC6 315 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 APOPT1Q96IL0 206 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 METTL2AQ96IZ6 378 aaKnown RBP18.53■□□□□ 0.56
SHMT1-209ENST00000582653 FAM111AQ96PZ2 611 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 LMF2Q9BU23 707 aaKnown RBP18.53■□□□□ 0.56
SHMT1-209ENST00000582653 IQCGQ9H095 443 aaKnown RBP18.53■□□□□ 0.56
SHMT1-209ENST00000582653 ACBD3Q9H3P7 528 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 Q9N2J8 555 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 EQTNQ9NQ60 294 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 PLEKHA6Q9Y2H5 1048 aa18.53■□□□□ 0.56
SHMT1-209ENST00000582653 PRRC2AP48634 2157 aaKnown RBP18.52■□□□□ 0.56
SHMT1-209ENST00000582653 SETD2Q9BYW2 2564 aaPredicted RBP18.52■□□□□ 0.56
SHMT1-209ENST00000582653 PDPK1O15530 556 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms