RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 EVI2BP34910 448 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 RFX3P48380 749 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 PSMD4P55036 377 aaKnown RBP21.77■■□□□ 1.08
SHMT1-206ENST00000579558 EMX2Q04743 252 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 MLC1Q15049 377 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 VPS26BQ4G0F5 336 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 CPTPQ5TA50 214 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 KRTCAP2Q8N6L1 136 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 CDRT4Q8N9R6 151 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 MGARPQ8TDB4 240 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 GPR151Q8TDV0 419 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 PRPF18Q99633 342 aaKnown RBP21.77■■□□□ 1.08
SHMT1-206ENST00000579558 ATAD3AQ9NVI7 634 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 NOP53Q9NZM5 478 aaKnown RBP21.77■■□□□ 1.08
SHMT1-206ENST00000579558 NTMQ9P121 344 aa21.77■■□□□ 1.08
SHMT1-206ENST00000579558 CENPEQ02224 2701 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 GXYLT2A0PJZ3 443 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 C19orf84I3L1E1 186 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 SCO2O43819 266 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 KCNH1O95259 989 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 IL33O95760 270 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 G6PDP11413 515 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 COX6B1P14854 86 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 PRPS1L1P21108 318 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 PTGER4P35408 488 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 GCKP35557 465 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 GAS1P54826 345 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 WDR4P57081 412 aaKnown RBP21.76■■□□□ 1.07
SHMT1-206ENST00000579558 MAGOHP61326 146 aaKnown RBP21.76■■□□□ 1.07
SHMT1-206ENST00000579558 BST1Q10588 318 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 SMU1Q2TAY7 513 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 NHSL2Q5HYW2 709 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 VASNQ6EMK4 673 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 OR5M10Q6IEU7 315 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 PM20D2Q8IYS1 436 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 OR14L1PQ8NHC6 308 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 PIK3R3Q92569 461 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 SLC9A6Q92581 669 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 HOXB13Q92826 284 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-206ENST00000579558 ABTB1Q969K4 478 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-206ENST00000579558 DTNBP1Q96EV8 351 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 RMND5BQ96G75 393 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-206ENST00000579558 UGT2B28Q9BY64 529 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 OR2B2Q9GZK3 357 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 RUBCNLQ9H714 662 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 AKTIPQ9H8T0 292 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 TMBIM4Q9HC24 238 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 ASIC5Q9NY37 505 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 FLRT3Q9NZU0 649 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 HAO1Q9UJM8 370 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 FBXL2Q9UKC9 423 aa21.76■■□□□ 1.07
SHMT1-206ENST00000579558 CELSR2Q9HCU4 2923 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 GIMAP1-GIMAP5A0A087WTJ2 511 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 FAM90A27PA6NNH2 459 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 NKX2-2O95096 273 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 SNRPB2P08579 225 aaKnown RBP21.75■■□□□ 1.07
SHMT1-206ENST00000579558 BMP7P18075 431 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 PRR5P85299 388 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 NATD1Q8N6N6 113 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 LILRB4Q8NHJ6 448 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 FBXO30Q8TB52 745 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 NUDT8Q8WV74 236 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 OR5P2Q8WZ92 322 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 COQ8BQ96D53 544 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 GIMAP5Q96F15 307 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 PRDM14Q9GZV8 571 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 SIRT3Q9NTG7 399 aaPredicted RBP21.75■■□□□ 1.07
SHMT1-206ENST00000579558 ZCCHC3Q9NUD5 404 aaKnown RBP21.75■■□□□ 1.07
SHMT1-206ENST00000579558 PPP4R1LQ9P1A2 415 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 ABCG2Q9UNQ0 655 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 CAMK2AQ9UQM7 478 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 SNX8Q9Y5X2 465 aa21.75■■□□□ 1.07
SHMT1-206ENST00000579558 AHRRA9YTQ3 701 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 FADS1O60427 444 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 ACP2P11117 423 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 SRD5A2P31213 254 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 MAP3K8P41279 467 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 DCST1Q5T197 706 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 MFSD12Q6NUT3 480 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 RIMKLAQ8IXN7 391 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 OR4K17Q8NGC6 315 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 TLCD1Q96CP7 247 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 FAM120BQ96EK7 910 aaKnown RBP21.74■■□□□ 1.07
SHMT1-206ENST00000579558 NUF2Q9BZD4 464 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 PNPOQ9NVS9 261 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 FAM120CQ9NX05 1096 aaKnown RBP21.74■■□□□ 1.07
SHMT1-206ENST00000579558 NKIRAS1Q9NYS0 192 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 TAS2R10Q9NYW0 307 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 DKKL1Q9UK85 242 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 ARHGAP21Q5T5U3 1957 aa21.74■■□□□ 1.07
SHMT1-206ENST00000579558 A0A0G2JNJ9 132 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 C17orf51A8MQB3 221 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 FAM47E-STBD1D6RA91 191 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 UTS2O95399 124 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 C6orf47O95873 294 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 ACTL6AO96019 429 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 IGKV1D-16P01601 117 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 ADH7P40394 386 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 KIR3DL1P43629 444 aa21.73■■□□□ 1.07
SHMT1-206ENST00000579558 ZFP36L2P47974 494 aaKnown RBP21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms