RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CT45A8P0DMV1 189 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 CT45A9P0DMV2 189 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 CD99P14209 185 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 ARSBP15848 533 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 C21orf33P30042 268 aaPredicted RBP5.17□□□□□ -1.58
VPS53-219ENST00000576019 CSTF2P33240 577 aaKnown RBP eCLIP5.17□□□□□ -1.58
VPS53-219ENST00000576019 GRIA1P42261 906 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 OR3A3P47888 321 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 RASSF2P50749 326 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 MAZP56270 477 aaKnown RBP5.17□□□□□ -1.58
VPS53-219ENST00000576019 HAND2P61296 217 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 PJVKQ0ZLH3 352 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 DHX34Q14147 1143 aaKnown RBP5.17□□□□□ -1.58
VPS53-219ENST00000576019 KRT81Q14533 505 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 ODF3L2Q3SX64 289 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 CT45A2Q5DJT8 189 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 LYPLAL1Q5VWZ2 237 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 OR7E24Q6IFN5 339 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 PYHIN1Q6K0P9 492 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 CAPN13Q6MZZ7 669 aaPredicted RBP5.17□□□□□ -1.58
VPS53-219ENST00000576019 DBX2Q6ZNG2 339 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 SLC24A5Q71RS6 500 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 SLC22A16Q86VW1 577 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 ODF3L1Q8IXM7 274 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 NECAB1Q8N987 351 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 OR4C15Q8NGM1 316 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 RAB3IL1Q8TBN0 382 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 TRMT10AQ8TBZ6 339 aaKnown RBP5.17□□□□□ -1.58
VPS53-219ENST00000576019 SENP5Q96HI0 755 aaPredicted RBP5.17□□□□□ -1.58
VPS53-219ENST00000576019 HPDLQ96IR7 371 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 SGK494Q96LW2 274 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 C3orf30Q96M34 536 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 CITED1Q99966 193 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 TMEM43Q9BTV4 400 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 C8orf33Q9H7E9 229 aaPredicted RBP5.17□□□□□ -1.58
VPS53-219ENST00000576019 ZNF665Q9H7R5 613 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 RAB18Q9NP72 206 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 RGS18Q9NS28 235 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 ONECUT1Q9UBC0 465 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 LHX3Q9UBR4 397 aa5.17□□□□□ -1.58
VPS53-219ENST00000576019 EPPK1P58107 5090 aaKnown RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 DBX1A6NMT0 343 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 WASH3PC4AMC7 463 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 OVOL3O00110 214 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 MLNRO43193 412 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 CTAG2O75638 210 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 SLITRK3O94933 977 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 PRKCGP05129 697 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 F7P08709 466 aaPredicted RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 HIST1H2AGP0C0S8 130 aaPredicted RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 PABPC4LP0CB38 370 aaKnown RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 ZNF883P0CG24 379 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 FAM106CPP0CH98 169 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 AXLP30530 894 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 CLDN6P56747 220 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 RIPK4P57078 832 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 BST1Q10588 318 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 MFAP5Q13361 173 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 EXOSC2Q13868 293 aaKnown RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 SQLEQ14534 574 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 ZNF234Q14588 700 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 OPCMLQ14982 345 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 ZNF124Q15973 351 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 AADACL4Q5VUY2 407 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 FCRLBQ6BAA4 426 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 RTL6Q6ICC9 239 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 OR4C11Q6IEV9 310 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 ZSCAN25Q6NSZ9 544 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 TMEM64Q6YI46 380 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 ZNF782Q6ZMW2 699 aaPredicted RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 ZNF66Q6ZN08 573 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 COX8CQ7Z4L0 72 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 CBWD2Q8IUF1 395 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 EID3Q8N140 333 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 MUC20Q8N307 709 aaPredicted RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 TMEM99Q8N816 258 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 ADAD2Q8NCV1 583 aaKnown RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 RDM1Q8NG50 284 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 MAGEC3Q8TD91 643 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 HIST1H2ACQ93077 130 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 ABTB1Q969K4 478 aaPredicted RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 PINX1Q96BK5 328 aaKnown RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 BPIFA2Q96DR5 249 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 CCNL2Q96S94 520 aaPredicted RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 KRT12Q99456 494 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 BDH2Q9BUT1 245 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 DUSP26Q9BV47 211 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 SLC26A1Q9H2B4 701 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 EXO5Q9H790 373 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 AGPAT5Q9NUQ2 364 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 SLC38A7Q9NVC3 462 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 PLEK2Q9NYT0 353 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 OR6C2Q9NZP2 312 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 ERVK-18Q9QC07 812 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 PACSIN3Q9UKS6 424 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 ZNF490Q9ULM2 529 aaPredicted RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 DIMT1Q9UNQ2 313 aaKnown RBP5.16□□□□□ -1.58
VPS53-219ENST00000576019 OR1A2Q9Y585 309 aa5.16□□□□□ -1.58
VPS53-219ENST00000576019 MYH8P13535 1937 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms