RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ADNPQ9H2P0 1102 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 KAT8Q9H7Z6 458 aaKnown RBP8.54□□□□□ -1.04
VPS35-211ENST00000569950 IL1RL2Q9HB29 575 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.54□□□□□ -1.04
VPS35-211ENST00000569950 ABCD2Q9UBJ2 740 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 CNOT11Q9UKZ1 510 aaKnown RBP8.54□□□□□ -1.04
VPS35-211ENST00000569950 PCDHGB4Q9UN71 923 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 CFL2Q9Y281 166 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 DSPPQ9NZW4 1301 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 PINLYPA6NC86 204 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 OR6C70A6NIJ9 312 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 TTC36A6NLP5 189 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 TMEM229AB2RXF0 380 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 MKRN2OSH3BPM6 223 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 ERVH48-1M5A8F1 160 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 NME4O00746 187 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 AIM2O14862 343 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 WISP2O76076 250 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 NPPAP01160 153 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 CHRM4P08173 479 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 PRIM2P49643 509 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 FOXO1Q12778 655 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 STX5Q13190 355 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 MAPK14Q16539 360 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 SYPL1Q16563 259 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS35-211ENST00000569950 ARHGAP11BQ3KRB8 267 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 NADK2Q4G0N4 442 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 DCST2Q5T1A1 773 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 ABHD17BQ5VST6 288 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 SPINK14Q6IE38 97 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 TYW3Q6IPR3 259 aaKnown RBP8.53□□□□□ -1.04
VPS35-211ENST00000569950 TMEM81Q6P7N7 255 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 IL20RBQ6UXL0 311 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 FRRS1Q6ZNA5 592 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 SZRD1Q7Z422 152 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 DNAJB8Q8NHS0 232 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 GPR151Q8TDV0 419 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 GRHL3Q8TE85 626 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 PAQR8Q8TEZ7 354 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 SLC38A5Q8WUX1 472 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 DIO2Q92813 273 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 MAL2Q969L2 176 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 EFHD2Q96C19 240 aaPredicted RBP8.53□□□□□ -1.04
VPS35-211ENST00000569950 ZNF524Q96C55 264 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 ROPN1LQ96C74 230 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 SLC7A6OSQ96CW6 309 aaPredicted RBP8.53□□□□□ -1.04
VPS35-211ENST00000569950 WBP1Q96G27 269 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 RMND5BQ96G75 393 aaPredicted RBP8.53□□□□□ -1.04
VPS35-211ENST00000569950 FRMD6Q96NE9 622 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 BTBD2Q9BX70 525 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 ZNF350Q9GZX5 532 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 SLC38A1Q9H2H9 487 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 ZNF71Q9NQZ8 489 aaPredicted RBP8.53□□□□□ -1.04
VPS35-211ENST00000569950 TAGLN3Q9UI15 199 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 CBLCQ9ULV8 474 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 LHX6Q9UPM6 363 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 CHST2Q9Y4C5 530 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 PCDHGB7Q9Y5F8 929 aa8.53□□□□□ -1.04
VPS35-211ENST00000569950 NPIPA5A0A0B4J1W7 369 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 CCT8L1PA6NM43 557 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 NPIPA7E9PJI5 369 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 CDK2AP1O14519 115 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 OIP5O43482 229 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 NME2P1O60361 137 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 ICOSLGO75144 302 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 BCAS1O75363 584 aaPredicted RBP8.52□□□□□ -1.05
VPS35-211ENST00000569950 SORBS2O94875 1100 aaKnown RBP8.52□□□□□ -1.05
VPS35-211ENST00000569950 GUSBP08236 651 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 ALOX5P09917 674 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 NPIPA8P0DM63 369 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 ARAFP10398 606 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 RPS4Y1P22090 263 aaKnown RBP8.52□□□□□ -1.05
VPS35-211ENST00000569950 NME2P22392 152 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 CHI3L1P36222 383 aaPredicted RBP8.52□□□□□ -1.05
VPS35-211ENST00000569950 MAGEA8P43361 318 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 KHKP50053 298 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 PNLIPRP2P54317 469 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 PCBP3P57721 371 aaKnown RBP8.52□□□□□ -1.05
VPS35-211ENST00000569950 POU6F2P78424 691 aaPredicted RBP8.52□□□□□ -1.05
VPS35-211ENST00000569950 PLCXD2Q0VAA5 305 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 FADDQ13158 208 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 OR1C1Q15619 314 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 INPP5JQ15735 1006 aaPredicted RBP8.52□□□□□ -1.05
VPS35-211ENST00000569950 FXNQ16595 210 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 GRAMD1BQ3KR37 738 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 COLEC12Q5KU26 742 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 RNFT1Q5M7Z0 435 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 SLC6A19Q695T7 634 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 FIGNL1Q6PIW4 674 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 RINLQ6ZS11 566 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 COMTD1Q86VU5 262 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 LSRQ86X29 649 aaPredicted RBP8.52□□□□□ -1.05
VPS35-211ENST00000569950 ZZZ3Q8IYH5 903 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 CYP4Z2PQ8N1L4 340 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 TRIML2Q8N7C3 387 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 COX18Q8N8Q8 333 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 GOLM1Q8NBJ4 401 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 POGLUT1Q8NBL1 392 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 RBM15BQ8NDT2 890 aaKnown RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms