RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 MKRN2Q9H000 416 aaKnown RBP13.61□□□□□ -0.23
VPS35-210ENST00000568784 BTBD1Q9H0C5 482 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 ISG20L2Q9H9L3 353 aaKnown RBP13.61□□□□□ -0.23
VPS35-210ENST00000568784 SLC23A1Q9UHI7 598 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 OR1A2Q9Y585 309 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 NPIPA5A0A0B4J1W7 369 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 NPIPA7E9PJI5 369 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 LCMT2O60294 686 aaKnown RBP13.61□□□□□ -0.23
VPS35-210ENST00000568784 NPIPA8P0DM63 369 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 IRS1P35568 1242 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 MMP12P39900 470 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 PXNP49023 591 aaPredicted RBP13.61□□□□□ -0.23
VPS35-210ENST00000568784 RAB14P61106 215 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 SLC7A9P82251 487 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 C3orf38Q5JPI3 329 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 WDR45BQ5MNZ6 344 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 CCNJQ5T5M9 372 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 IKBIPQ70UQ0 350 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 VN1R5Q7Z5H4 357 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 DTD2Q96FN9 168 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 A4GALTQ9NPC4 353 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 SLC23A2Q9UGH3 650 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 A0A0B4J203 849 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 OR10A3P58181 314 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 LTB4RQ15722 352 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 SMUG1Q53HV7 270 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 C18orf63Q68DL7 685 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 BHLHB9Q6PI77 547 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 KIF18BQ86Y91 864 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 PIAS4Q8N2W9 510 aaPredicted RBP13.61□□□□□ -0.23
VPS35-210ENST00000568784 FAM109AQ8N4B1 249 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 TOMM5Q8N4H5 51 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 PLA2G15Q8NCC3 412 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 OR9A2Q8NGT5 310 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 HMGB4Q8WW32 186 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 PRRC1Q96M27 445 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 ZDHHC5Q9C0B5 715 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 KLHL31Q9H511 634 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 SEMA4GQ9NTN9 838 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 HNRNPCL2B2RXH8 293 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 MAGEB4O15481 346 aaPredicted RBP13.6□□□□□ -0.23
VPS35-210ENST00000568784 ADH1AP07327 375 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 GKN3PP0CG01 181 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 PYCR1P32322 319 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 TOR1AIP1Q5JTV8 583 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 RPTNQ6XPR3 784 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 QSOX2Q6ZRP7 698 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 CXXC5Q7LFL8 322 aaKnown RBP13.6□□□□□ -0.23
VPS35-210ENST00000568784 GNPDA2Q8TDQ7 276 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 GRHL3Q8TE85 626 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 RELTQ969Z4 430 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 WDFY2Q96P53 400 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 SGPP1Q9BX95 441 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 MS4A8Q9BY19 250 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 GPR55Q9Y2T6 319 aaPredicted RBP13.6□□□□□ -0.23
VPS35-210ENST00000568784 OR52A4PA6NMU1 304 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 KIAA0355O15063 1070 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 ACSL1P33121 698 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 MAPK9P45984 424 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 TAS2R38P59533 333 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 GPR176Q14439 515 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 C6orf132Q5T0Z8 1188 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 DPPA4Q7L190 304 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 DGLUCYQ7Z3D6 616 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 OR4M1Q8NGD0 313 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 MAP6Q96JE9 813 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 ACOXLQ9NUZ1 547 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 KCND3Q9UK17 655 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 TRPM7Q96QT4 1865 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 IRGMA1A4Y4 181 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 SERTM1A2A2V5 107 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 ZNF860A6NHJ4 632 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 TSPAN4O14817 238 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 FGF18O76093 207 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 ITGB7P26010 798 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 STOMP27105 288 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 GIFP27352 417 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 CERS1P27544 350 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 EVX1P49640 407 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 PRR5P85299 388 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 SF3A2Q15428 464 aaKnown RBP13.6□□□□□ -0.23
VPS35-210ENST00000568784 SFRP4Q6FHJ7 346 aaPredicted RBP13.6□□□□□ -0.23
VPS35-210ENST00000568784 CHMP1BQ7LBR1 199 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 NUP43Q8NFH3 380 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 TMEM255BQ8WV15 326 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 OR8D1Q8WZ84 308 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 KCNN2Q9H2S1 579 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 PPIEQ9UNP9 301 aaKnown RBP13.6□□□□□ -0.23
VPS35-210ENST00000568784 ZNF780BQ9Y6R6 833 aa13.6□□□□□ -0.23
VPS35-210ENST00000568784 PRAMEF27A3QJZ7 478 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 FCMRO60667 390 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 PRNPP04156 253 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 HOXB3P14651 431 aaPredicted RBP13.59□□□□□ -0.23
VPS35-210ENST00000568784 C21orf58P58505 322 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 MINDY4Q4G0A6 757 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 OR4C11Q6IEV9 310 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 ADGRD2Q7Z7M1 963 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 LRRTM4Q86VH4 590 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 PLCZ1Q86YW0 608 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 BRD7Q9NPI1 651 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms