RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, human

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-208	ENST00000567250	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	MMEL1	Q495T6	779 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	COQ5	Q5HYK3	327 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	DCST2	Q5T1A1	773 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	LRIF1	Q5T3J3	769 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	PRAMEF20	Q5VT98	475 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	SLC30A6	Q6NXT4	461 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	SLC2A7	Q6PXP3	512 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	C16orf62	Q7Z3J2	963 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	SLC22A16	Q86VW1	577 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	SULF2	Q8IWU5	870 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	ZFP62	Q8NB50	900 aa	Predicted RBP	11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	OR4N2	Q8NGD1	307 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	PIK3R3	Q92569	461 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	GTF2H4	Q92759	462 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	CDS1	Q92903	461 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	HGD	Q93099	445 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	EFHD2	Q96C19	240 aa	Predicted RBP	11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	C16orf58	Q96GQ5	468 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	FRMD6	Q96NE9	622 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	YIPF4	Q9BSR8	244 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	NMUR2	Q9GZQ4	415 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	SH2D2A	Q9NP31	389 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	OLAH	Q9NV23	265 aa		11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	THUMPD1	Q9NXG2	353 aa	Known RBP	11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	CNOT11	Q9UKZ1	510 aa	Known RBP	11.18	□□□□□ -0.62
SF3B3-208	ENST00000567250	TMEM247	A6NEH6	219 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	TFEC	O14948	347 aa	Predicted RBP	11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	SHOX2	O60902	331 aa	Predicted RBP	11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	KCNK2	O95069	426 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	GSN	P06396	782 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	HPGD	P15428	266 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	ELAVL4	P26378	380 aa	Known RBP	11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	CASP3	P42574	277 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	MAN2A2	P49641	1150 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	RPS26	P62854	115 aa	Known RBP	11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	ALDH6A1	Q02252	535 aa	Known RBP	11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	TLE1	Q04724	770 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	KLF10	Q13118	480 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	FADD	Q13158	208 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	COLEC12	Q5KU26	742 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	GKAP1	Q5VSY0	366 aa	Predicted RBP	11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	DHDDS	Q86SQ9	333 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	PACS2	Q86VP3	889 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	CLEC4F	Q8N1N0	589 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	CISD2	Q8N5K1	135 aa	Known RBP	11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	DPP10	Q8N608	796 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	OR2M7	Q8NG81	312 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	OR5D16	Q8NGK9	328 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	GRHL3	Q8TE85	626 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	ZFP90	Q8TF47	636 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	SNRNP40	Q96DI7	357 aa	Known RBP	11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	OTUB1	Q96FW1	271 aa	Predicted RBP	11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	OR51I1	Q9H343	314 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	TPT1P8	Q9HAU6	139 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	ADAM21	Q9UKJ8	722 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	ARL2BP	Q9Y2Y0	163 aa		11.17	□□□□□ -0.62
SF3B3-208	ENST00000567250	GXYLT2	A0PJZ3	443 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	ICOSLG	O75144	302 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	DCTN3	O75935	186 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	FAM107A	O95990	144 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	NGFR	P08138	427 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	CYP4B1	P13584	511 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	EVI2B	P34910	448 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	DNASE1L1	P49184	302 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	MLLT10	P55197	1068 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	PMP22	Q01453	160 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	STX5	Q13190	355 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	NFYC	Q13952	458 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	GNA13	Q14344	377 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	BNC2	Q6ZN30	1099 aa	Predicted RBP	11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	ZNF605	Q86T29	641 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	ATCAY	Q86WG3	371 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	RNF130	Q86XS8	419 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	ZNF527	Q8NB42	609 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	PCYOX1L	Q8NBM8	494 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	CHDH	Q8NE62	594 aa	Predicted RBP	11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	OR52N2	Q8NGI0	321 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	FAR1	Q8WVX9	515 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	OIT3	Q8WWZ8	545 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	NR4A3	Q92570	626 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	TMEM41A	Q96HV5	264 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	TAAR6	Q96RI8	345 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	NODAL	Q96S42	347 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	ANGPTL4	Q9BY76	406 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	TBL1XR1	Q9BZK7	514 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	HOXD1	Q9GZZ0	328 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	PAIP1	Q9H074	479 aa	Known RBP	11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	IL1RL2	Q9HB29	575 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	SLC52A3	Q9NQ40	469 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	POLE3	Q9NRF9	147 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	SDHAF3	Q9NRP4	125 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	DEPP	Q9NTK1	212 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	P2RX2	Q9UBL9	471 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	LIPT1	Q9Y234	373 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	PCDHB14	Q9Y5E9	798 aa		11.16	□□□□□ -0.62
SF3B3-208	ENST00000567250	WIF1	Q9Y5W5	379 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms