RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 CCDC116Q8IYX3 515 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 ZNF615Q8N8J6 731 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 OR5P2Q8WZ92 322 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 POP5Q969H6 163 aaKnown RBP12.37□□□□□ -0.43
CLK3-218ENST00000566926 UTP4Q969X6 686 aaKnown RBP12.37□□□□□ -0.43
CLK3-218ENST00000566926 CTHRC1Q96CG8 243 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 MAGED4Q96JG8 741 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 ANKRD27Q96NW4 1050 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 FAM173AQ9BQD7 235 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 SPATA9Q9BWV2 254 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 RAD21L1Q9H4I0 556 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 TAS2R9Q9NYW1 312 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 MAT2BQ9NZL9 334 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 CNIH4Q9P003 139 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 SUCOQ9UBS9 1254 aaKnown RBP12.37□□□□□ -0.43
CLK3-218ENST00000566926 SLC7A8Q9UHI5 535 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 ZNF639Q9UID6 485 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 NPIPA1Q9UND3 350 aa12.37□□□□□ -0.43
CLK3-218ENST00000566926 NUP214P35658 2090 aaPredicted RBP12.36□□□□□ -0.43
CLK3-218ENST00000566926 TRBV5-3A0A0A0MS03 114 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 A0A1W2PRB8 838 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 NADKO95544 446 aaPredicted RBP12.36□□□□□ -0.43
CLK3-218ENST00000566926 CLPSP04118 112 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 FBXO45P0C2W1 286 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 S1PR1P21453 382 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 GPR85P60893 370 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 TRAP1Q12931 704 aaKnown RBP12.36□□□□□ -0.43
CLK3-218ENST00000566926 CEBPEQ15744 281 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 NTRK2Q16620 822 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 C1orf146Q5VVC0 180 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 NANOGP8Q6NSW7 305 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 MTFR2Q6P444 385 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 BHLHB9Q6PI77 547 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 FAM111BQ6SJ93 734 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 SLC22A16Q86VW1 577 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 SIAH3Q8IW03 269 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 SLC15A3Q8IY34 581 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 ZNF441Q8N8Z8 693 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 FAM13CQ8NE31 585 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 ADCY4Q8NFM4 1077 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 OR2M7Q8NG81 312 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 PAQR8Q8TEZ7 354 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 JADE3Q92613 823 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 MOAP1Q96BY2 351 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 ASB9Q96DX5 294 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 HSPBAP1Q96EW2 488 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 TRIM15Q9C019 465 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 PAIP1Q9H074 479 aaKnown RBP12.36□□□□□ -0.43
CLK3-218ENST00000566926 NANOGQ9H9S0 305 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 IL1RL2Q9HB29 575 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 ASH1LQ9NR48 2969 aaKnown RBP12.36□□□□□ -0.43
CLK3-218ENST00000566926 ERRFI1Q9UJM3 462 aaPredicted RBP12.36□□□□□ -0.43
CLK3-218ENST00000566926 NPFFR2Q9Y5X5 522 aa12.36□□□□□ -0.43
CLK3-218ENST00000566926 USP9YO00507 2555 aaPredicted RBP12.35□□□□□ -0.43
CLK3-218ENST00000566926 ACOX3O15254 700 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 LRRTM2O43300 516 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 ZNF354AO60765 605 aaPredicted RBP12.35□□□□□ -0.43
CLK3-218ENST00000566926 IFI6P09912 130 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 NAGAP17050 411 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 PTPN6P29350 595 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 MANFP55145 182 aaKnown RBP12.35□□□□□ -0.43
CLK3-218ENST00000566926 PSPHP78330 225 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 TXNL4AP83876 142 aaKnown RBP12.35□□□□□ -0.43
CLK3-218ENST00000566926 MGAT2Q10469 447 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 CAPRIN1Q14444 709 aaKnown RBP12.35□□□□□ -0.43
CLK3-218ENST00000566926 RUNDC3AQ59EK9 446 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 TBCELQ5QJ74 424 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 ANKRD46Q86W74 232 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 EID3Q8N140 333 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 OR52R1Q8NGF1 315 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 OR4A15Q8NGL6 344 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 PSMA8Q8TAA3 256 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 RELTQ969Z4 430 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 ADIPOR1Q96A54 375 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 LCORQ96JN0 433 aaPredicted RBP12.35□□□□□ -0.43
CLK3-218ENST00000566926 SECISBP2Q96T21 854 aaKnown RBP12.35□□□□□ -0.43
CLK3-218ENST00000566926 ECSITQ9BQ95 431 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 SLC39A3Q9BRY0 314 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 TSPAN10Q9H1Z9 355 aaPredicted RBP12.35□□□□□ -0.43
CLK3-218ENST00000566926 RASSF4Q9H2L5 321 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 ALG2Q9H553 416 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 VAPAQ9P0L0 249 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 CD300AQ9UGN4 299 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 BOKQ9UMX3 212 aaPredicted RBP12.35□□□□□ -0.43
CLK3-218ENST00000566926 PCDHB14Q9Y5E9 798 aa12.35□□□□□ -0.43
CLK3-218ENST00000566926 TRGV8A0A0C4DH27 118 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 WIPF3A6NGB9 483 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 MYO1GB0I1T2 1018 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 HS6ST1O60243 411 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 PLOD3O60568 738 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 SLC19A2O60779 497 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 KRT75O95678 551 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 CBX7O95931 251 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 LDLRP01130 860 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 ABCB1P08183 1280 aaPredicted RBP12.34□□□□□ -0.43
CLK3-218ENST00000566926 CCL3P10147 92 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 ABOP16442 354 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 HOXB9P17482 250 aaPredicted RBP12.34□□□□□ -0.43
CLK3-218ENST00000566926 DRD5P21918 477 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 PPICP45877 212 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms