RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 VPS26BQ4G0F5 336 aa15.32■□□□□ 0.04
CLK3-210ENST00000563112 OR5M10Q6IEU7 315 aa15.32■□□□□ 0.04
CLK3-210ENST00000563112 ANKRD26P1Q6NSI1 321 aa15.32■□□□□ 0.04
CLK3-210ENST00000563112 R3HCC1LQ7Z5L2 792 aaKnown RBP15.32■□□□□ 0.04
CLK3-210ENST00000563112 TRIM42Q8IWZ5 723 aa15.32■□□□□ 0.04
CLK3-210ENST00000563112 ZPLD1Q8TCW7 415 aa15.32■□□□□ 0.04
CLK3-210ENST00000563112 MTERF3Q96E29 417 aa15.32■□□□□ 0.04
CLK3-210ENST00000563112 SFXN2Q96NB2 322 aa15.32■□□□□ 0.04
CLK3-210ENST00000563112 LMF2Q9BU23 707 aaKnown RBP15.32■□□□□ 0.04
CLK3-210ENST00000563112 TMEM109Q9BVC6 243 aa15.32■□□□□ 0.04
CLK3-210ENST00000563112 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.32■□□□□ 0.04
CLK3-210ENST00000563112 BAIAP2L1Q9UHR4 511 aa15.32■□□□□ 0.04
CLK3-210ENST00000563112 V9GYY5 206 aaPredicted RBP15.32■□□□□ 0.04
CLK3-210ENST00000563112 OTOGQ6ZRI0 2925 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 MED12Q93074 2177 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 ANKHD1Q8IWZ3 2542 aaKnown RBP15.31■□□□□ 0.04
CLK3-210ENST00000563112 TMEM233B4DJY2 109 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 H0Y3Z8 333 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 PIP5K1BO14986 540 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 SCO2O43819 266 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 KCNH1O95259 989 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 DPP4P27487 766 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 UQCRC1P31930 480 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 EVI2BP34910 448 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 RPL3P39023 403 aaKnown RBP15.31■□□□□ 0.04
CLK3-210ENST00000563112 RFX3P48380 749 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 SRYQ05066 204 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 UGT3A2Q3SY77 523 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 DCST1Q5T197 706 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 ARSKQ6UWY0 536 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 LRIG3Q6UXM1 1119 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 ZCCHC23Q6ZST2 131 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 MREGQ8N565 214 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 CLHC1Q8NHS4 586 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 PPP1R14CQ8TAE6 165 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 AGR3Q8TD06 166 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 RNF138Q8WVD3 245 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 CIDECQ96AQ7 238 aaPredicted RBP15.31■□□□□ 0.04
CLK3-210ENST00000563112 EQTNQ9NQ60 294 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 ACSS1Q9NUB1 689 aaPredicted RBP15.31■□□□□ 0.04
CLK3-210ENST00000563112 FBXL2Q9UKC9 423 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 ABCG2Q9UNQ0 655 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 CSMD1Q96PZ7 3565 aa15.31■□□□□ 0.04
CLK3-210ENST00000563112 MBD3L4A6NDZ8 208 aaPredicted RBP15.3■□□□□ 0.04
CLK3-210ENST00000563112 MBD3L3A6NE82 208 aaPredicted RBP15.3■□□□□ 0.04
CLK3-210ENST00000563112 MBD3L5A6NJ08 208 aaPredicted RBP15.3■□□□□ 0.04
CLK3-210ENST00000563112 SYT5O00445 386 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 CTIFO43310 598 aaKnown RBP15.3■□□□□ 0.04
CLK3-210ENST00000563112 FADS1O60427 444 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 IL33O95760 270 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 BPGMP07738 259 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 BCKDHAP12694 445 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 GABRA3P34903 492 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 HPCAL1P37235 193 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 ASCL1P50553 236 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 PRKAG1P54619 331 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 GAS1P54826 345 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 GFRA1P56159 465 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 DSCR4P56555 118 aaPredicted RBP15.3■□□□□ 0.04
CLK3-210ENST00000563112 WNT3P56703 355 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 PDE7AQ13946 482 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 KRT71Q3SY84 523 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 ATP6AP1LQ52LC2 224 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 SZRD1Q7Z422 152 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 NUDCD3Q8IVD9 361 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 NAXEQ8NCW5 288 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 NUP43Q8NFH3 380 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 MBD3L2Q8NHZ7 208 aaPredicted RBP15.3■□□□□ 0.04
CLK3-210ENST00000563112 GPR151Q8TDV0 419 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 DSN1Q9H410 356 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 PTGES2Q9H7Z7 377 aa15.3■□□□□ 0.04
CLK3-210ENST00000563112 FAM120CQ9NX05 1096 aaKnown RBP15.3■□□□□ 0.04
CLK3-210ENST00000563112 FOXD3Q9UJU5 478 aaPredicted RBP15.3■□□□□ 0.04
CLK3-210ENST00000563112 KDM4EB2RXH2 506 aaPredicted RBP15.29■□□□□ 0.04
CLK3-210ENST00000563112 RGS16O15492 202 aaPredicted RBP15.29■□□□□ 0.04
CLK3-210ENST00000563112 ZNF500O60304 480 aaPredicted RBP15.29■□□□□ 0.04
CLK3-210ENST00000563112 PEX11AO75192 247 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 ZWINTO95229 277 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 CHMP24386 653 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 CTSSP25774 331 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 OPRM1P35372 400 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 STARP49675 285 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 ZNF136P52737 540 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 DGKQP52824 942 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 DLX5P56178 289 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 KRTAP10-9P60411 292 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 ZNF385BQ569K4 471 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 CDRT4Q8N9R6 151 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 RELL2Q8NC24 303 aaPredicted RBP15.29■□□□□ 0.04
CLK3-210ENST00000563112 RNASE6Q93091 150 aaKnown RBP15.29■□□□□ 0.04
CLK3-210ENST00000563112 TM9SF2Q99805 663 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 TUBA1CQ9BQE3 449 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 PARD6BQ9BYG5 372 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 HHATLQ9HCP6 504 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 RPH3AQ9Y2J0 694 aaPredicted RBP15.29■□□□□ 0.04
CLK3-210ENST00000563112 SPG11Q96JI7 2443 aa15.29■□□□□ 0.04
CLK3-210ENST00000563112 EMC8O43402 210 aa15.28■□□□□ 0.04
CLK3-210ENST00000563112 TYROBPO43914 113 aa15.28■□□□□ 0.04
CLK3-210ENST00000563112 TMIGD3P0DMS9 266 aaPredicted RBP15.28■□□□□ 0.04
CLK3-210ENST00000563112 CREB1P16220 341 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms