RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 GTDC1Q4AE62 458 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 ZNF628Q5EBL2 1059 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 MTX3Q5HYI7 312 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.91□□□□□ -0.66
LDLR-212ENST00000560467 SAXO2Q658L1 398 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 C16orf62Q7Z3J2 963 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 KRT73Q86Y46 540 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 MICU2Q8IYU8 434 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 OR2L13Q8N349 312 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 AMER2Q8N7J2 671 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 MORN4Q8NDC4 146 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 TMEM52Q8NDY8 209 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 SUN3Q8TAQ9 357 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 BRIX1Q8TDN6 353 aaKnown RBP10.91□□□□□ -0.66
LDLR-212ENST00000560467 SLC26A7Q8TE54 656 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 XAGE5Q8WWM1 108 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 NR4A3Q92570 626 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 FAM162AQ96A26 154 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 AURKBQ96GD4 344 aaPredicted RBP10.91□□□□□ -0.66
LDLR-212ENST00000560467 CCDC120Q96HB5 630 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 RSRC1Q96IZ7 334 aaKnown RBP10.91□□□□□ -0.66
LDLR-212ENST00000560467 CLPTM1LQ96KA5 538 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 LURAP1Q96LR2 239 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 LMF1Q96S06 567 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 LPAR4Q99677 370 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 SPATA5L1Q9BVQ7 753 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 CXorf21Q9HAI6 301 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 NECTIN3Q9NQS3 549 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 P2RX2Q9UBL9 471 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 CD300AQ9UGN4 299 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 SLC7A8Q9UHI5 535 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 MRTO4Q9UKD2 239 aaKnown RBP10.91□□□□□ -0.66
LDLR-212ENST00000560467 POMPQ9Y244 141 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 ANGPT4Q9Y264 503 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 SNX13Q9Y5W8 968 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 PDZD2O15018 2839 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 SETD2Q9BYW2 2564 aaPredicted RBP10.91□□□□□ -0.66
LDLR-212ENST00000560467 PKDREJQ9NTG1 2253 aa10.91□□□□□ -0.66
LDLR-212ENST00000560467 AKAP9Q99996 3911 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 ZGRF1Q86YA3 2104 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 HIVEP1P15822 2718 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 PRORSD1PA6NEY8 169 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 A8MUA0 341 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 UPK1AO00322 258 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 ASNA1O43681 348 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 SERPINB7O75635 380 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 PDE9AO76083 593 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 CELA2AP08217 269 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 NR2F1P10589 423 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 COX6A1P12074 109 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 PTPN6P29350 595 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 TNFSF10P50591 281 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 AP2B1P63010 937 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 PSPHP78330 225 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 RHAGQ02094 409 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 EEF1A2Q05639 463 aaKnown RBP10.9□□□□□ -0.66
LDLR-212ENST00000560467 ZNF155Q12901 538 aaPredicted RBP10.9□□□□□ -0.66
LDLR-212ENST00000560467 GAB1Q13480 694 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 VEZF1Q14119 521 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 LASP1Q14847 261 aaKnown RBP10.9□□□□□ -0.66
LDLR-212ENST00000560467 LTB4RQ15722 352 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 VMACQ2NL98 169 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 PRICKLE4Q2TBC4 344 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 FAAH2Q6GMR7 532 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 RPUSD3Q6P087 351 aaKnown RBP10.9□□□□□ -0.66
LDLR-212ENST00000560467 PGM2L1Q6PCE3 622 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 GFRALQ6UXV0 394 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 RNF111Q6ZNA4 994 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 GDF7Q7Z4P5 450 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 SPATA24Q86W54 205 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 MSRB3Q8IXL7 192 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 KBTBD2Q8IY47 623 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 CLEC4FQ8N1N0 589 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 SIRT6Q8N6T7 355 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 LZICQ8WZA0 190 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 PSMF1Q92530 271 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 FIG4Q92562 907 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 SLC9A6Q92581 669 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 SENP5Q96HI0 755 aaPredicted RBP10.9□□□□□ -0.66
LDLR-212ENST00000560467 ZNF583Q96ND8 569 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 ZNF607Q96SK3 696 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 OR8D2Q9GZM6 311 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 RUBCNLQ9H714 662 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 EQTNQ9NQ60 294 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 SIRT3Q9NTG7 399 aaPredicted RBP10.9□□□□□ -0.66
LDLR-212ENST00000560467 ADPRHL2Q9NX46 363 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 NTMQ9P121 344 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 SH3BGRL2Q9UJC5 107 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 KLF2Q9Y5W3 355 aaPredicted RBP10.9□□□□□ -0.66
LDLR-212ENST00000560467 CCDC88CQ9P219 2028 aa10.9□□□□□ -0.66
LDLR-212ENST00000560467 DOCK10Q96BY6 2186 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 IGKV3D-11A0A0A0MRZ8 115 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 TRAV17A0A0B4J275 112 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 MYOCOSA0A1B0GUC4 107 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 CXCR6O00574 342 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 SNRNP200O75643 2136 aaKnown RBP10.89□□□□□ -0.67
LDLR-212ENST00000560467 AK1P00568 194 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 ICAM2P13598 275 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 ETFAP13804 333 aa10.89□□□□□ -0.67
LDLR-212ENST00000560467 MST1P26927 711 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms