RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TRIM13O60858 407 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 IL2RAP01589 272 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 NTSP30990 170 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 SRD5A2P31213 254 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 EVI2BP34910 448 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 ASCL1P50553 236 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 RPL38P63173 70 aaKnown RBP16.07■□□□□ 0.16
HDDC3-205ENST00000559898 GALNTL6Q49A17 601 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 ARL13AQ5H913 290 aaPredicted RBP16.07■□□□□ 0.16
HDDC3-205ENST00000559898 ZAR1Q86SH2 424 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 MARCH3Q86UD3 253 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 SAMD14Q8IZD0 417 aaPredicted RBP16.07■□□□□ 0.16
HDDC3-205ENST00000559898 GCNT2Q8N0V5 402 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 OR2M3Q8NG83 312 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 FAM76AQ8TAV0 307 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 LINC01560Q8TB33 94 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 C3orf30Q96M34 536 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 NPAS1Q99742 590 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 DDX18Q9NVP1 670 aaKnown RBP16.07■□□□□ 0.16
HDDC3-205ENST00000559898 FBXO34Q9NWN3 711 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 CBLCQ9ULV8 474 aa16.07■□□□□ 0.16
HDDC3-205ENST00000559898 SPG11Q96JI7 2443 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 H0Y3Z8 333 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 SLC28A1O00337 649 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 DVL2O14641 736 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 PIP5K1BO14986 540 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 TGM6O95932 706 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 ACTL6AO96019 429 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 ACP2P11117 423 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 CPN1P15169 458 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 CAPN3P20807 821 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 DPP4P27487 766 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 GSTM5P46439 218 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 EFR3AQ14156 821 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 IFNEQ86WN2 208 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 FADS6Q8N9I5 356 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 ZPLD1Q8TCW7 415 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 TCP10LQ8TDR4 215 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 AENQ8WTP8 325 aaKnown RBP16.06■□□□□ 0.16
HDDC3-205ENST00000559898 TWIST2Q8WVJ9 160 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 GIMAP5Q96F15 307 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 C16orf58Q96GQ5 468 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 LMF2Q9BU23 707 aaKnown RBP16.06■□□□□ 0.16
HDDC3-205ENST00000559898 STMN4Q9H169 189 aaPredicted RBP16.06■□□□□ 0.16
HDDC3-205ENST00000559898 CALHM2Q9HA72 323 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 MKS1Q9NXB0 559 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 CLCF1Q9UBD9 225 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 LGALS13Q9UHV8 139 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 DKKL1Q9UK85 242 aa16.06■□□□□ 0.16
HDDC3-205ENST00000559898 EEF1E1-BLOC1S5C9J1V9 151 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 PDPK1O15530 556 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 EEF1E1O43324 174 aaKnown RBP16.05■□□□□ 0.16
HDDC3-205ENST00000559898 RGS14O43566 566 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 ABCB7O75027 752 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 COQ9O75208 318 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 CTAG2O75638 210 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 NUDT17P0C025 328 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 TMIGD3P0DMS9 266 aaPredicted RBP16.05■□□□□ 0.16
HDDC3-205ENST00000559898 CTSSP25774 331 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 GABRA3P34903 492 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 KRT20P35900 424 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 MAP3K8P41279 467 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 KIR2DL3P43628 341 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 SUCLG1P53597 346 aaKnown RBP16.05■□□□□ 0.16
HDDC3-205ENST00000559898 PRKAG1P54619 331 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 PDE7AQ13946 482 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 GRAMD1BQ3KR37 738 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 IKBIPQ70UQ0 350 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 RNASE6Q93091 150 aaKnown RBP16.05■□□□□ 0.16
HDDC3-205ENST00000559898 INTS12Q96CB8 462 aaKnown RBP16.05■□□□□ 0.16
HDDC3-205ENST00000559898 SFXN2Q96NB2 322 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 YIPF4Q9BSR8 244 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 ZNF395Q9H8N7 513 aaPredicted RBP16.05■□□□□ 0.16
HDDC3-205ENST00000559898 PPCSQ9HAB8 311 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 DNAJB12Q9NXW2 375 aaKnown RBP16.05■□□□□ 0.16
HDDC3-205ENST00000559898 JKAMPQ9P055 326 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 PPP4R1LQ9P1A2 415 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 ZNF629Q9UEG4 869 aaPredicted RBP16.05■□□□□ 0.16
HDDC3-205ENST00000559898 AKAP6Q13023 2319 aa16.05■□□□□ 0.16
HDDC3-205ENST00000559898 MED13LQ71F56 2210 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 FAM47E-STBD1D6RA91 191 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 ZWINTO95229 277 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 IL33O95760 270 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 BCKDHAP12694 445 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 ZNF708P17019 499 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 DNAJA1P31689 397 aaKnown RBP16.04■□□□□ 0.16
HDDC3-205ENST00000559898 DGKQP52824 942 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 NAA20P61599 178 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 FBXL19-AS1Q494R0 122 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 LUZP2Q86TE4 346 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 DDIASQ8IXT1 998 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 UBQLNLQ8IYU4 475 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 OR7A2PQ8NGA2 310 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 OR4K17Q8NGC6 315 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 DUSP19Q8WTR2 217 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 RMND5BQ96G75 393 aaPredicted RBP16.04■□□□□ 0.16
HDDC3-205ENST00000559898 C1orf50Q9BV19 199 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 REEP4Q9H6H4 257 aa16.04■□□□□ 0.16
HDDC3-205ENST00000559898 SH3BP4Q9P0V3 963 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms