RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	TSPY1	Q01534	308 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	AKAP17A	Q02040	695 aa	Known RBP	2.57	□□□□□ -2
VPS13C-208	ENST00000559119	WSCD2	Q2TBF2	565 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	TWISTNB	Q3B726	338 aa	Predicted RBP	2.57	□□□□□ -2
VPS13C-208	ENST00000559119	LRRC23	Q53EV4	343 aa	Predicted RBP	2.57	□□□□□ -2
VPS13C-208	ENST00000559119	SEL1L2	Q5TEA6	688 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	CASC4	Q6P4E1	433 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	C6orf89	Q6UWU4	347 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	SIGLEC15	Q6ZMC9	328 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	BZW1	Q7L1Q6	419 aa	Known RBP	2.57	□□□□□ -2
VPS13C-208	ENST00000559119	TMEM179B	Q7Z7N9	219 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	FAM228A	Q86W67	206 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	SLC25A38	Q96DW6	304 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	RPGRIP1	Q96KN7	1286 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	SSX3	Q99909	188 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	ZWILCH	Q9H900	591 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	SLC25A19	Q9HC21	320 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	SLC40A1	Q9NP59	571 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	TRPV5	Q9NQA5	729 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	DNAJC11	Q9NVH1	559 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	HOOK1	Q9UJC3	728 aa	Known RBP	2.57	□□□□□ -2
VPS13C-208	ENST00000559119	CFAP45	Q9UL16	551 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	HPCAL4	Q9UM19	191 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	USP16	Q9Y5T5	823 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	GRIN2D	O15399	1336 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	EVC2	Q86UK5	1308 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	SYNRG	Q9UMZ2	1314 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	CEMIP	Q8WUJ3	1361 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	KDM6A	O15550	1401 aa	Predicted RBP	2.57	□□□□□ -2
VPS13C-208	ENST00000559119	DUOX2	Q9NRD8	1548 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	ADCY10	Q96PN6	1610 aa		2.57	□□□□□ -2
VPS13C-208	ENST00000559119	MYO5C	Q9NQX4	1742 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	AK9	Q5TCS8	1911 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	CTAGE15	A4D2H0	777 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	ANKRD65	E5RJM6	399 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	PFKFB2	O60825	505 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	HMMR	O75330	724 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	GSTA1	P08263	222 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	IDO1	P14902	403 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	CTNNA1	P35221	906 aa	Known RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	PRKCI	P41743	596 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	RAD23A	P54725	363 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	SH3BGR	P55822	239 aa	Predicted RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	GNG11	P61952	73 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	VSNL1	P62760	191 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	GNGT1	P63211	74 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	GABPA	Q06546	454 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	OR1C1	Q15619	314 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	CAMK4	Q16566	473 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	GLYR1	Q49A26	553 aa	Predicted RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	MFSD7	Q6UXD7	560 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	KDM7A	Q6ZMT4	941 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	RUFY3	Q7L099	469 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	CTAGE6	Q86UF2	777 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	ERICH1	Q86X53	443 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	VSIG1	Q86XK7	387 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	VSTM4	Q8IW00	320 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	CD302	Q8IX05	232 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	SIX6OS1	Q8N1H7	587 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	CCDC148	Q8NFR7	591 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	C17orf50	Q8WW18	174 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	ATP6V1E2	Q96A05	226 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	ZMAT2	Q96NC0	199 aa	Known RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	RASL10B	Q96S79	203 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	CENPO	Q9BU64	300 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	UPF3B	Q9BZI7	483 aa	Known RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	TSGA10	Q9BZW7	698 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	XPO4	Q9C0E2	1151 aa	Known RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	HYPK	Q9NX55	129 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	CWC25	Q9NXE8	425 aa	Predicted RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	UTP6	Q9NYH9	597 aa	Known RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	C15orf41	Q9Y2V0	281 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	RNF115	Q9Y4L5	304 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	ASB3	Q9Y575	518 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	UBN2	Q6ZU65	1347 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	ADCY9	O60503	1353 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	NPHP4	O75161	1426 aa	Predicted RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	TRO	Q12816	1431 aa	Predicted RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	CD109	Q6YHK3	1445 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	LMTK2	Q8IWU2	1503 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	GPATCH8	Q9UKJ3	1502 aa	Known RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	KDM5A	P29375	1690 aa	Known RBP	2.56	□□□□□ -2
VPS13C-208	ENST00000559119	GTF3C1	Q12789	2109 aa		2.56	□□□□□ -2
VPS13C-208	ENST00000559119	OVOS2	A0A0G2JMS6	1433 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	OVOS2	A0A0J9YW53	1432 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	MAGEB16	A2A368	324 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	SBNO1	A3KN83	1393 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	CFAP73	A6NFT4	308 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119		H7C0S8	307 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	PTPRT	O14522	1441 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ASTN1	O14525	1302 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	NDUFAB1	O14561	156 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	UNC13B	O14795	1591 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	PSMA7	O14818	248 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	E2F6	O75461	281 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ATP6V1G2	O95670	118 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	FAM107A	O95990	144 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	RLN1	P04808	185 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	ALPI	P09923	528 aa		2.55	□□□□□ -2
VPS13C-208	ENST00000559119	TSPY4	P0CV99	314 aa		2.55	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms