RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 CNTN4Q8IWV2 1026 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 LRRC17Q8N6Y2 441 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 CSNK1A1LQ8N752 337 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 PHYHIPQ92561 330 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 DHTKD1Q96HY7 919 aaPredicted RBP2.4□□□□□ -2.03
VPS13C-207ENST00000558919 VPS39Q96JC1 886 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 ZNF184Q99676 751 aaPredicted RBP2.4□□□□□ -2.03
VPS13C-207ENST00000558919 ERVK-6Q9BXR3 956 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 FTHL17Q9BXU8 183 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 NACA2Q9H009 215 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 ABCG8Q9H221 673 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 MID1IP1Q9NPA3 183 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 MYOZ2Q9NPC6 264 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 CWC25Q9NXE8 425 aaPredicted RBP2.4□□□□□ -2.03
VPS13C-207ENST00000558919 CYP39A1Q9NYL5 469 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 NDUFA13Q9P0J0 144 aa2.4□□□□□ -2.03
VPS13C-207ENST00000558919 TDRKHQ9Y2W6 561 aaKnown RBP2.4□□□□□ -2.03
VPS13C-207ENST00000558919 TMEM89A2RUT3 159 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 FBLL1A6NHQ2 334 aaKnown RBP2.39□□□□□ -2.03
VPS13C-207ENST00000558919 TRIM49D1C9J1S8 452 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 PNPP00491 289 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 IGFBP1P08833 259 aaPredicted RBP2.39□□□□□ -2.03
VPS13C-207ENST00000558919 ABHD2P08910 425 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 SLC35G4P0C7Q5 338 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 ZNF17P17021 662 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 PTBP1P26599 531 aaKnown RBP eCLIP2.39□□□□□ -2.03
VPS13C-207ENST00000558919 CDH5P33151 784 aaPredicted RBP2.39□□□□□ -2.03
VPS13C-207ENST00000558919 RPS8P62241 208 aaKnown RBP2.39□□□□□ -2.03
VPS13C-207ENST00000558919 UBXN1Q04323 297 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 RPA4Q13156 261 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 ORC2Q13416 577 aaPredicted RBP2.39□□□□□ -2.03
VPS13C-207ENST00000558919 LRIT3Q3SXY7 679 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 OR2B11Q5JQS5 317 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 BEND6Q5SZJ8 279 aaPredicted RBP2.39□□□□□ -2.03
VPS13C-207ENST00000558919 LIPKQ5VXJ0 399 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 HACD2Q6Y1H2 254 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 TMEM179BQ7Z7N9 219 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 LINC01555Q8NAE3 123 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 TMEM185AQ8NFB2 350 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 WDR36Q8NI36 951 aaKnown RBP2.39□□□□□ -2.03
VPS13C-207ENST00000558919 SNX21Q969T3 373 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 COQ7Q99807 217 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 EBF4Q9BQW3 602 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 DDX47Q9H0S4 455 aaKnown RBP2.39□□□□□ -2.03
VPS13C-207ENST00000558919 DUS2Q9NX74 493 aaKnown RBP2.39□□□□□ -2.03
VPS13C-207ENST00000558919 EXOSC1Q9Y3B2 195 aaKnown RBP2.39□□□□□ -2.03
VPS13C-207ENST00000558919 L3MBTL1Q9Y468 752 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 TEX264Q9Y6I9 313 aa2.39□□□□□ -2.03
VPS13C-207ENST00000558919 A0A0U1RRA0 63 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 H3BMH7 237 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 PDXKO00764 312 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 TM9SF1O15321 606 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 HTATSF1O43719 755 aaKnown RBP2.38□□□□□ -2.03
VPS13C-207ENST00000558919 SEMG1P04279 462 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 HMOX1P09601 288 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 ZNF32P17041 273 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 EMDP50402 254 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 OC90Q02509 493 aaPredicted RBP2.38□□□□□ -2.03
VPS13C-207ENST00000558919 GFPT1Q06210 699 aaPredicted RBP2.38□□□□□ -2.03
VPS13C-207ENST00000558919 BCL2L1Q07817 233 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 ZP4Q12836 540 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 KCNJ11Q14654 390 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 CARTPTQ16568 116 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 HFEQ30201 348 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 AGKQ53H12 422 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 DCST2Q5T1A1 773 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 OR5M10Q6IEU7 315 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 IGFL3Q6UXB1 125 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 NET1Q7Z628 596 aaPredicted RBP2.38□□□□□ -2.03
VPS13C-207ENST00000558919 MKXQ8IYA7 352 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 CCDC36Q8IYA8 594 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 BBS1Q8NFJ9 593 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 CCSER1Q9C0I3 900 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 GHRLQ9UBU3 117 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 DUSP12Q9UNI6 340 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 GTF3C1Q12789 2109 aa2.38□□□□□ -2.03
VPS13C-207ENST00000558919 METP08581 1390 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 ANKRD30BQ9BXX2 1392 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 DHRS7CA6NNS2 312 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 E9PLD3 99 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 IMPA2O14732 288 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 LYPLA1O75608 230 aaPredicted RBP2.37□□□□□ -2.03
VPS13C-207ENST00000558919 CABYRO75952 493 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 IGKV3-11P04433 115 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 PGK2P07205 417 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 STSP08842 583 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 CYP11B1P15538 503 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 FUT3P21217 361 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 SRP54P61011 504 aaKnown RBP2.37□□□□□ -2.03
VPS13C-207ENST00000558919 MRPS6P82932 125 aaKnown RBP2.37□□□□□ -2.03
VPS13C-207ENST00000558919 OTUD4Q01804 1114 aaKnown RBP2.37□□□□□ -2.03
VPS13C-207ENST00000558919 ZNF45Q02386 682 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 MECOMQ03112 1051 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 SRYQ05066 204 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 DPYSQ14117 519 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 ZNF658BQ4V348 819 aaPredicted RBP2.37□□□□□ -2.03
VPS13C-207ENST00000558919 PNCKQ6P2M8 343 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 FAM159AQ6UWV7 190 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 OLFM4Q6UX06 510 aa2.37□□□□□ -2.03
VPS13C-207ENST00000558919 ZNF562Q6V9R5 426 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms