RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 SLC24A3Q9HC58 644 aa11.55□□□□□ -0.56
SHMT2-230ENST00000557427 EGFL7Q9UHF1 273 aa11.55□□□□□ -0.56
SHMT2-230ENST00000557427 SCN2AQ99250 2005 aa11.55□□□□□ -0.56
SHMT2-230ENST00000557427 ZANQ9Y493 2812 aa11.55□□□□□ -0.56
SHMT2-230ENST00000557427 MYOCOSA0A1B0GUC4 107 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 INAFM1C9JVW0 142 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 FOXE1O00358 373 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-230ENST00000557427 SAP18O00422 153 aaKnown RBP11.54□□□□□ -0.56
SHMT2-230ENST00000557427 TGFB1P01137 390 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 SP1P08047 785 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 CYC1P08574 325 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 HOXB9P17482 250 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-230ENST00000557427 TACR1P25103 407 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 PSMA4P25789 261 aaKnown RBP11.54□□□□□ -0.56
SHMT2-230ENST00000557427 PTGS2P35354 604 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 ASMTP46597 345 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 NR0B1P51843 470 aaKnown RBP11.54□□□□□ -0.56
SHMT2-230ENST00000557427 NUP107P57740 925 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 ACSM2AQ08AH3 577 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 PMPCAQ10713 525 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 DDX39BQ13838 428 aaKnown RBP11.54□□□□□ -0.56
SHMT2-230ENST00000557427 SPIN4Q56A73 249 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 EMC4Q5J8M3 183 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 ACSM2BQ68CK6 577 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 PLAG1Q6DJT9 500 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 TMEM211Q6ICI0 200 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 TRIM40Q6P9F5 258 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 ABHD17CQ6PCB6 329 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 ADGRG5Q8IZF4 528 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 RNF175Q8N4F7 328 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 ANKFN1Q8N957 763 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 PAPD5Q8NDF8 572 aaKnown RBP11.54□□□□□ -0.56
SHMT2-230ENST00000557427 OR2L5Q8NG80 312 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 M1APQ8TC57 530 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 CANT1Q8WVQ1 401 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 UBE2E3Q969T4 207 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 ZNF354BQ96LW1 612 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 CCDC115Q96NT0 180 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 TSSK3Q96PN8 268 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 PAIP1Q9H074 479 aaKnown RBP11.54□□□□□ -0.56
SHMT2-230ENST00000557427 NECTIN3Q9NQS3 549 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 PRDM9Q9NQV7 894 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 VAPAQ9P0L0 249 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 TEKT2Q9UIF3 430 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 RAB26Q9ULW5 256 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 CUBNO60494 3623 aa11.54□□□□□ -0.56
SHMT2-230ENST00000557427 MAGEA13PA6NCF6 341 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 RTCAO00442 366 aaKnown RBP11.53□□□□□ -0.56
SHMT2-230ENST00000557427 RAF1P04049 648 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 FCGR1AP12314 374 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 BMP2P12643 396 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 CD46P15529 392 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 ZNF24P17028 368 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 GGT1P19440 569 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 ZNF10P21506 573 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-230ENST00000557427 CERS1P27544 350 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 GSTM2P28161 218 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 TRPC1P48995 793 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 PHC1P78364 1004 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 PHEXP78562 749 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 TGM3Q08188 693 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 SLC13A2Q13183 592 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 SELPLGQ14242 412 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 EXT1Q16394 746 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 TBCELQ5QJ74 424 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 ARSKQ6UWY0 536 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 QSOX2Q6ZRP7 698 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 UBE3DQ7Z6J8 389 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 GPR180Q86V85 440 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 IFNEQ86WN2 208 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 LIX1LQ8IVB5 337 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 PHC2Q8IXK0 858 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 MSRB3Q8IXL7 192 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 FAM47BQ8NA70 645 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 OR52E4Q8NGH9 312 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 CLHC1Q8NHS4 586 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 HUS1BQ8NHY5 278 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 LRTOMTQ8WZ04 291 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 POP5Q969H6 163 aaKnown RBP11.53□□□□□ -0.56
SHMT2-230ENST00000557427 NSMCE2Q96MF7 247 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 QRFPRQ96P65 431 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 MTERF1Q99551 399 aaKnown RBP11.53□□□□□ -0.56
SHMT2-230ENST00000557427 UTP23Q9BRU9 249 aaKnown RBP11.53□□□□□ -0.56
SHMT2-230ENST00000557427 NPLQ9BXD5 320 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-230ENST00000557427 OR51B5Q9H339 312 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 Q9H521 79 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 CDCP1Q9H5V8 836 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 MMP25Q9NPA2 562 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 SERHLQ9NQF3 203 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 PRDM7Q9NQW5 492 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 PRTFDC1Q9NRG1 225 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 PNO1Q9NRX1 252 aaKnown RBP11.53□□□□□ -0.56
SHMT2-230ENST00000557427 SLC25A37Q9NYZ2 338 aa11.53□□□□□ -0.56
SHMT2-230ENST00000557427 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-230ENST00000557427 HIVEP2P31629 2446 aa11.52□□□□□ -0.56
SHMT2-230ENST00000557427 PHF3Q92576 2039 aaKnown RBP11.52□□□□□ -0.56
SHMT2-230ENST00000557427 FAM171A2A8MVW0 826 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 FAM220BPB1ANY3 271 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 CLDN4O14493 209 aa11.52□□□□□ -0.57
SHMT2-230ENST00000557427 DENRO43583 198 aaKnown RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms