RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	TP53	P04637	393 aa	Predicted RBP	11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	STX2	P32856	288 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	CORO7	P57737	925 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	RPS3A	P61247	264 aa	Known RBP	11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	TRA2B	P62995	288 aa	Known RBP	11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	MRPS25	P82663	173 aa	Known RBP	11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	OCRL	Q01968	901 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	KRTAP1-1	Q07627	177 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	NAB1	Q13506	487 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	GANAB	Q14697	944 aa	Known RBP	11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	GUSBP1	Q15486	140 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	SGCB	Q16585	318 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	CLEC12B	Q2HXU8	276 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	ERCC6L	Q2NKX8	1250 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	ZNF628	Q5EBL2	1059 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	SLC44A2	Q8IWA5	706 aa	Predicted RBP	11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	PTGR2	Q8N8N7	351 aa	Predicted RBP	11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	FADS6	Q8N9I5	356 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	MAPK1IP1L	Q8NDC0	245 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	OR2M3	Q8NG83	312 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	ZNF675	Q8TD23	568 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	FBF1	Q8TES7	1133 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	GFM2	Q969S9	779 aa	Known RBP	11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	PHF21B	Q96EK2	531 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	PLPPR2	Q96GM1	343 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	VSTM2L	Q96N03	204 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	STMN4	Q9H169	189 aa	Predicted RBP	11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	DPH5	Q9H2P9	285 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	ANKRA2	Q9H9E1	313 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	PFDN4	Q9NQP4	134 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	SDHAF3	Q9NRP4	125 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	FARSB	Q9NSD9	589 aa	Known RBP	11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	NMRK1	Q9NWW6	199 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	MED11	Q9P086	117 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	TLN2	Q9Y4G6	2542 aa		11.38	□□□□□ -0.59
SHMT2-223	ENST00000556689	UQCRHL	A0A096LP55	91 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689		A0A096LPK6	155 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	C17orf51	A8MQB3	221 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689		H3BML4	177 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	NME6	O75414	186 aa	Predicted RBP	11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	ESRRB	O95718	433 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	ALDOA	P04075	364 aa	Known RBP	11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	EVI2B	P34910	448 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	MAGEA4	P43358	317 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	CLDN20	P56880	219 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	SLC7A5	Q01650	507 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	GALNT1	Q10472	559 aa	Predicted RBP	11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	VEZF1	Q14119	521 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	STAC2	Q6ZMT1	411 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	OR4F6	Q8NGB9	312 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	OR4N2	Q8NGD1	307 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	OR5M1	Q8NGP8	315 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	AKAP1	Q92667	903 aa	Known RBP eCLIP	11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	KAT2A	Q92830	837 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	EFHD2	Q96C19	240 aa	Predicted RBP	11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	TRMT61A	Q96FX7	289 aa	Known RBP	11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	GPR78	Q96P69	363 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	TMEM204	Q9BSN7	226 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	REG4	Q9BYZ8	158 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	PRRG4	Q9BZD6	226 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	PTGES2	Q9H7Z7	377 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	BRF2	Q9HAW0	419 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	ZBTB26	Q9HCK0	441 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	FANCF	Q9NPI8	374 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	LAMP3	Q9UQV4	416 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	EMC9	Q9Y3B6	208 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	OR10H1	Q9Y4A9	318 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	AP4B1	Q9Y6B7	739 aa		11.37	□□□□□ -0.59
SHMT2-223	ENST00000556689	EXPH5	Q8NEV8	1989 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	OR2M5	A3KFT3	312 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	TLX2	O43763	284 aa	Predicted RBP	11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	SCO2	O43819	266 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	AQP8	O94778	261 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	PDYN	P01213	254 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	FCGR2A	P12318	317 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	IL11	P20809	199 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	TYK2	P29597	1187 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	IDUA	P35475	653 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	RPS4X	P62701	263 aa	Known RBP	11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	TRAF3	Q13114	568 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	ETFDH	Q16134	617 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	GLYR1	Q49A26	553 aa	Predicted RBP	11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	GGTA1P	Q4G0N0	100 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	TECRL	Q5HYJ1	363 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	NPSR1	Q6W5P4	371 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	HIPK1	Q86Z02	1210 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	WFDC8	Q8IUA0	241 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	PHC2	Q8IXK0	858 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	SAMD14	Q8IZD0	417 aa	Predicted RBP	11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	METTL25	Q8N6Q8	603 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	EIF1AD	Q8N9N8	165 aa	Known RBP	11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	OR9A2	Q8NGT5	310 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	OR6K3	Q8NGY3	331 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	UHMK1	Q8TAS1	419 aa	Known RBP	11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	SELENOM	Q8WWX9	145 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	IFT81	Q8WYA0	676 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	TMEM158	Q8WZ71	300 aa		11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	MRRF	Q96E11	262 aa	Known RBP	11.36	□□□□□ -0.59
SHMT2-223	ENST00000556689	NSUN5	Q96P11	429 aa	Known RBP	11.36	□□□□□ -0.59

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