RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 PSMD4P55036 377 aaKnown RBP11.26□□□□□ -0.61
SHMT2-209ENST00000553949 PSME3P61289 254 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 FUT5Q11128 374 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.26□□□□□ -0.61
SHMT2-209ENST00000553949 ARHGAP11BQ3KRB8 267 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 RABL3Q5HYI8 236 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 GCNT6Q5T4J0 391 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 DESI1Q6ICB0 168 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 SPINK14Q6IE38 97 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 C6orf89Q6UWU4 347 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 RTL4Q6ZR62 310 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 NUP54Q7Z3B4 507 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 ARPINQ7Z6K5 226 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 HPS6Q86YV9 775 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 GOLM1Q8NBJ4 401 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 MDS2Q8NDY4 140 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 CATSPER1Q8NEC5 780 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 FBXO27Q8NI29 283 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 HGDQ93099 445 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 TMEM125Q96AQ2 219 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 SDF2Q99470 211 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 G6PC3Q9BUM1 346 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.26□□□□□ -0.61
SHMT2-209ENST00000553949 KAT8Q9H7Z6 458 aaKnown RBP11.26□□□□□ -0.61
SHMT2-209ENST00000553949 SH2D2AQ9NP31 389 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 ZNF71Q9NQZ8 489 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-209ENST00000553949 FBXO34Q9NWN3 711 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-209ENST00000553949 P2RX2Q9UBL9 471 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 LIPT1Q9Y234 373 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 CSAG2Q9Y5P2 127 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 NUP214P35658 2090 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-209ENST00000553949 B2RBV5 119 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 TP53I11O14683 189 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 HS6ST1O60243 411 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 DPM1O60762 260 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 SLC25A12O75746 678 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 TFPTP0C1Z6 253 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 NR2F1P10589 423 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 SFTPCP11686 197 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 CYP4B1P13584 511 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 ATP6V1C1P21283 382 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 MXRA7P84157 204 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 SLC25A3Q00325 362 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 EFR3AQ14156 821 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 MAPK11Q15759 364 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 SYPL1Q16563 259 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 CYP51A1Q16850 503 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 PCSK4Q6UW60 755 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 MDGA2Q7Z553 956 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 ZAR1Q86SH2 424 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 SERPINA11Q86U17 422 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 SLC15A3Q8IY34 581 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 RBMXL3Q8N7X1 1067 aaKnown RBP11.25□□□□□ -0.61
SHMT2-209ENST00000553949 ANKFN1Q8N957 763 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 OR10A6Q8NH74 314 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 SPPL2AQ8TCT8 520 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 PAQR8Q8TEZ7 354 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 SLC38A5Q8WUX1 472 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 MAL2Q969L2 176 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 TMCO6Q96DC7 493 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 WBP1Q96G27 269 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 C5orf34Q96MH7 638 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 TRNT1Q96Q11 434 aaKnown RBP11.25□□□□□ -0.61
SHMT2-209ENST00000553949 SECISBP2Q96T21 854 aaKnown RBP11.25□□□□□ -0.61
SHMT2-209ENST00000553949 ECSITQ9BQ95 431 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 ZNF350Q9GZX5 532 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 TMEM38AQ9H6F2 299 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 A4GALTQ9NPC4 353 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 TIMMDC1Q9NPL8 285 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 CMTM6Q9NX76 183 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 NDE1Q9NXR1 346 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 FLRT3Q9NZU0 649 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 LHX6Q9UPM6 363 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 AP3M1Q9Y2T2 418 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 L3MBTL1Q9Y468 752 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 CHCHD2Q9Y6H1 151 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-209ENST00000553949 DOCK10Q96BY6 2186 aa11.25□□□□□ -0.61
SHMT2-209ENST00000553949 ATMQ13315 3056 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 CACNA1GO43497 2377 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 TMEM247A6NEH6 219 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 SLC28A2O43868 658 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 FCMRO60667 390 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 ICOSLGO75144 302 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 STX11O75558 287 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 ZIC2O95409 532 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-209ENST00000553949 H6PDO95479 791 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 BCHEP06276 602 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 SP1P08047 785 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 CHRM4P08173 479 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 GUSBP08236 651 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 CCL3P10147 92 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 CD46P15529 392 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 LCN1P31025 176 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 CPOXP36551 454 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 GZMMP51124 257 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 SLC7A2P52569 658 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 RPP38P78345 283 aaKnown RBP11.24□□□□□ -0.61
SHMT2-209ENST00000553949 HPCAP84074 193 aa11.24□□□□□ -0.61
SHMT2-209ENST00000553949 BNIP1Q12981 228 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms