RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 TMED1Q13445 227 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 C1orf185Q5T7R7 199 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 C1QL2Q7Z5L3 287 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 TGIF2LXQ8IUE1 241 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 RFLNBQ8N5W9 214 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 OR10V1Q8NGI7 309 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 OR4D5Q8NGN0 318 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 C18orf25Q96B23 403 aaPredicted RBP4.92□□□□□ -1.62
SCFD1-208ENST00000553278 SDSLQ96GA7 329 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 TNFRSF13CQ96RJ3 184 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 MTG1Q9BT17 334 aaPredicted RBP4.92□□□□□ -1.62
SCFD1-208ENST00000553278 CHRDL1Q9BU40 450 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 NUP58Q9BVL2 599 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 ROPN1BQ9BZX4 212 aaPredicted RBP4.92□□□□□ -1.62
SCFD1-208ENST00000553278 EXO5Q9H790 373 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 MCCC2Q9HCC0 563 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 ZNF334Q9HCZ1 680 aaPredicted RBP4.92□□□□□ -1.62
SCFD1-208ENST00000553278 GALPQ9UBC7 116 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 SEC14L4Q9UDX3 406 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 CIDEBQ9UHD4 219 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 CYTH4Q9UIA0 394 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 ANAPC7Q9UJX3 599 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 NPIPA1Q9UND3 350 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 IFT52Q9Y366 437 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 EXOSC1Q9Y3B2 195 aaKnown RBP4.92□□□□□ -1.62
SCFD1-208ENST00000553278 CSNK1G3Q9Y6M4 447 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 GRIN2DO15399 1336 aa4.92□□□□□ -1.62
SCFD1-208ENST00000553278 HEATR9A2RTY3 570 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 P2RY10O00398 339 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 FBP2O00757 339 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 OR7A17O14581 309 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 TIMM8AO60220 97 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-208ENST00000553278 SORBS2O94875 1100 aaKnown RBP4.91□□□□□ -1.62
SCFD1-208ENST00000553278 LRATO95237 230 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 TSPAN12O95859 305 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 BMP15O95972 392 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 ALPIP09923 528 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 UCP1P25874 307 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 RFC4P35249 363 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 BRCC3P46736 316 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 AP3M2P53677 418 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 MRPS21P82921 87 aaKnown RBP4.91□□□□□ -1.62
SCFD1-208ENST00000553278 FASTKQ14296 549 aaKnown RBP4.91□□□□□ -1.62
SCFD1-208ENST00000553278 MTF1Q14872 753 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 PPP1R7Q15435 360 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 MLF2Q15773 248 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-208ENST00000553278 BCL7AQ4VC05 210 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 CAVIN4Q5BKX8 364 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 CTSL3PQ5NE16 218 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 FFAR4Q5NUL3 377 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 SLX4IPQ5VYV7 408 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 CARD17Q5XLA6 110 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 FAM71F2Q6NXP2 309 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 SERINC5Q86VE9 423 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 PAQR7Q86WK9 346 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 ECHDC2Q86YB7 292 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 PHC2Q8IXK0 858 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 Q8N9G6 341 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-208ENST00000553278 OR10G7Q8NGN6 311 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 LMO3Q8TAP4 145 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 ZNF75CPQ92670 426 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-208ENST00000553278 BIRC7Q96CA5 298 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 PELI1Q96FA3 418 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 TUBGCP2Q9BSJ2 902 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 PNNQ9H307 717 aaKnown RBP4.91□□□□□ -1.62
SCFD1-208ENST00000553278 NT5DC2Q9H857 520 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 THEGQ9P2T0 379 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 ADAM28Q9UKQ2 775 aa4.91□□□□□ -1.62
SCFD1-208ENST00000553278 SERTM2A0A1B0GWG4 89 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 NCF1BA6NI72 391 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-208ENST00000553278 RNF212BA8MTL3 300 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 NCF1CA8MVU1 366 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-208ENST00000553278 BLOC1S5-TXNDC5H3BN57 136 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 FOXE1O00358 373 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-208ENST00000553278 DNALI1O14645 258 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-208ENST00000553278 CASC3O15234 703 aaKnown RBP4.9□□□□□ -1.63
SCFD1-208ENST00000553278 PPIHO43447 177 aaKnown RBP4.9□□□□□ -1.63
SCFD1-208ENST00000553278 SMAD6O43541 496 aaKnown RBP4.9□□□□□ -1.63
SCFD1-208ENST00000553278 PCDH7O60245 1069 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 TROVE2P10155 538 aaKnown RBP eCLIP4.9□□□□□ -1.63
SCFD1-208ENST00000553278 BCKDHAP12694 445 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 POU2F1P14859 743 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 FOSL2P15408 326 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 CD1DP15813 335 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 PGCP20142 388 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 MAP2K2P36507 400 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 HPCAL1P37235 193 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 EPS15P42566 896 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 SLC1A4P43007 532 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 STK19P49842 368 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-208ENST00000553278 ARHGAP19Q14CB8 494 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 RAB35Q15286 201 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 CD226Q15762 336 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 FAM189A2Q15884 450 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 TMEM44Q2T9K0 475 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 SNAI3Q3KNW1 292 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 GLIPR1L2Q4G1C9 344 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 PRR5LQ6MZQ0 368 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 KDM7AQ6ZMT4 941 aa4.9□□□□□ -1.63
SCFD1-208ENST00000553278 MOB3BQ86TA1 216 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms