RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 FAM240BA0A1B0GVZ2 78 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 GPR89AB7ZAQ6 455 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 CDC7O00311 574 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 NUDT21O43809 227 aaKnown RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 HCN1O60741 890 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 SLC43A1O75387 559 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 POP7O75817 140 aaKnown RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 IFNA7P01567 189 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 C9P02748 559 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 IL6P05231 212 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 TPOP07202 933 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 OR56A5P0C7T3 313 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 GPR89BP0CG08 455 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 RRASP10301 218 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 PRKAR1AP10644 381 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ARSBP15848 533 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 IDH2P48735 452 aaKnown RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 PDX1P52945 283 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 GBX2P52951 348 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 CLDN20P56880 219 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 OR1D5P58170 312 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 RAB14P61106 215 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 PCDH1Q08174 1060 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 NFE2L1Q14494 772 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 TSNQ15631 228 aaKnown RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 SSX1Q16384 188 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 GTDC1Q4AE62 458 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 FLYWCH1Q4VC44 716 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 GDPGP1Q6ZNW5 385 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 DCBLD1Q8N8Z6 715 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 SLC37A3Q8NCC5 494 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 DUSP18Q8NEJ0 188 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 METTL6Q8TCB7 284 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 GIMAP5Q96F15 307 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 GFM1Q96RP9 751 aaKnown RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF382Q96SR6 550 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 TAPBPLQ9BX59 468 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 CDCA4Q9BXL8 241 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 DERL2Q9GZP9 239 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 SYNDIG1Q9H7V2 258 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 IFT22Q9H7X7 185 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 FARSBQ9NSD9 589 aaKnown RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 TAS2R16Q9NYV7 291 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 FAM8A1Q9UBU6 413 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF175Q9Y473 711 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 CLCA3PQ9Y6N3 262 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 A0A1W2PNU3 283 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 PMS2P1A4D2B8 440 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 OR52A4PA6NMU1 304 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 BTN3A1O00481 513 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 NTN3O00634 580 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 FABP7O15540 132 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 F3P13726 295 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 HOXB1P14653 301 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 SLC2A4P14672 509 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 PBLDP30039 288 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CCR7P32248 378 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 HTR6P50406 440 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 GZMMP51124 257 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ITGA1P56199 1179 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 RPL38P63173 70 aaKnown RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 VLDLRP98155 873 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 BTN1A1Q13410 526 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 PTGR1Q14914 329 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ZMYND11Q15326 602 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 AMZ1Q400G9 498 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 RFTN2Q52LD8 501 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 SPANXN4Q5MJ08 99 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 DDI2Q5TDH0 399 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 NKAIN2Q5VXU1 208 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 GPR139Q6DWJ6 353 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 UNQ6494/PRO21346Q6UXR6 183 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 USP53Q70EK8 1073 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 GLCCI1Q86VQ1 547 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 TIGD4Q8IY51 512 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 GHDCQ8N2G8 530 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ZBTB2Q8N680 514 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 DNAJB8Q8NHS0 232 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CLHC1Q8NHS4 586 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 WDR36Q8NI36 951 aaKnown RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ST8SIA4Q92187 359 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 RBPMSQ93062 196 aaKnown RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 PHF21AQ96BD5 680 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 UPRTQ96BW1 309 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CDK15Q96Q40 435 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 OR52E6Q96RD3 313 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 HBEGFQ99075 208 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CPPED1Q9BRF8 314 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 DPY30Q9C005 99 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 LRRN3Q9H3W5 708 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 PIGUQ9H490 435 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 MCCC2Q9HCC0 563 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF624Q9P2J8 865 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-216ENST00000552909 NLKQ9UBE8 527 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 UBQLN2Q9UHD9 624 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 RPS6KA6Q9UK32 745 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 MGAT4AQ9UM21 535 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 ZFYVE26Q68DK2 2539 aa7.19□□□□□ -1.26
LIMA1-216ENST00000552909 CHD6Q8TD26 2715 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms