RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 HMX3A6NHT5 357 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 SOCS6O14544 535 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 SLC30A4O14863 429 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 MID1O15344 667 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 GUCY1B2O75343 617 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 CLEC3AO75596 197 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 RPN2P04844 631 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 DRD2P14416 443 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 HIST1H1TP22492 207 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ATP5A1P25705 553 aaKnown RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 PEBP1P30086 187 aaKnown RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 VEGFBP49765 207 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 PDX1P52945 283 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 STXBP1P61764 594 aaKnown RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 FZD5Q13467 585 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 CDK10Q15131 360 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 NDUFA9Q16795 377 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 MINDY4Q4G0A6 757 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 FAM78AQ5JUQ0 283 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 C6orf132Q5T0Z8 1188 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 VASNQ6EMK4 673 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ABHD17CQ6PCB6 329 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 FAM111BQ6SJ93 734 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 NRMQ8IXM6 262 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 RDH10Q8IZV5 341 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ASCC1Q8N9N2 400 aaKnown RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 LILRB4Q8NHJ6 448 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 TMEM255BQ8WV15 326 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 DIO2Q92813 273 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 MS4A3Q96HJ5 214 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 DEPDC7Q96QD5 511 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 GDF15Q99988 308 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF649Q9BS31 505 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 PINK1Q9BXM7 581 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ISG20L2Q9H9L3 353 aaKnown RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 MRPS18AQ9NVS2 196 aaKnown RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 APOBEC3BQ9UH17 382 aaKnown RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ZMIZ1Q9ULJ6 1067 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 DOCK8Q8NF50 2099 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 A0A0G2JPF8 293 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 A0A1B0GVC2 190 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 A6NIN4 97 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 KDM4EB2RXH2 506 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 HNRNPCL2B2RXH8 293 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 HNRNPCL3B7ZW38 293 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 CDC42EP2O14613 210 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 DNAJB6O75190 326 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 HNRNPCL4P0DMR1 293 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 GABRA5P31644 462 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 RAB28P51157 221 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 PRMT2P55345 433 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 UBE3AQ05086 875 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 TSPAN31Q12999 210 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 IRF4Q15306 451 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ZIC1Q15915 447 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 SNAP47Q5SQN1 464 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 TMEM164Q5U3C3 297 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 KIAA1211LQ6NV74 962 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 HSDL2Q6YN16 418 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 NR2C2APQ86WQ0 139 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 MARCH9Q86YJ5 346 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 KLBQ86Z14 1044 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 VWA5B2Q8N398 1253 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 SIRT6Q8N6T7 355 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 KCT2Q8NC54 265 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 SLC16A11Q8NCK7 471 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 NUP43Q8NFH3 380 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 OR52E1Q8NGJ3 308 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 GNPDA2Q8TDQ7 276 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 SPRYD4Q8WW59 207 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 COL26A1Q96A83 441 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 SNX18Q96RF0 628 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 TBX5Q99593 518 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ARHGDIGQ99819 225 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ATF6BQ99941 703 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 FAIM2Q9BWQ8 316 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ENKD1Q9H0I2 346 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 PCBD2Q9H0N5 130 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 NT5DC2Q9H857 520 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 RNF121Q9H920 327 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 MED20Q9H944 212 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 MRPS30Q9NP92 439 aaKnown RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 TMEM74BQ9NUR3 256 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ADAM29Q9UKF5 820 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 CES1P1Q9UKY3 287 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-213ENST00000552720 ATG2AQ2TAZ0 1938 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 FAM172BPA6NC97 362 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 TTC36A6NLP5 189 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SMLR1H3BR10 107 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 CACNB4O00305 520 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 GABRPO00591 440 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 CASC3O15234 703 aaKnown RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SURF4O15260 269 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 HYAL3O43820 417 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 ALPPP05187 535 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SLC2A2P11168 524 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 PSKH1P11801 424 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms