RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 LINC00032P0C843 101 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 TMIGD3P0DMS9 266 aaPredicted RBP14.82□□□□□ -0.04
VPS29-207ENST00000549970 NEFHP12036 1026 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 CTSSP25774 331 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 DPP4P27487 766 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 ALDH3A1P30838 453 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 GPC1P35052 558 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 LHX2P50458 406 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 DGKQP52824 942 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 IFFO1Q0D2I5 559 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 STX5Q13190 355 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 ZNHIT3Q15649 155 aaPredicted RBP14.82□□□□□ -0.04
VPS29-207ENST00000549970 DECR1Q16698 335 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 CYP27C1Q4G0S4 372 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 KANK2Q63ZY3 851 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 AAGABQ6PD74 315 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 TRABD2AQ86V40 505 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 RIBC1Q8N443 379 aaPredicted RBP14.82□□□□□ -0.04
VPS29-207ENST00000549970 BANPQ8N9N5 519 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 CLHC1Q8NHS4 586 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 NRGNQ92686 78 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 MECRQ9BV79 373 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 EQTNQ9NQ60 294 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 MKS1Q9NXB0 559 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 SLC17A7Q9P2U7 560 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 DNAJC15Q9Y5T4 150 aa14.82□□□□□ -0.04
VPS29-207ENST00000549970 ANKHD1Q8IWZ3 2542 aaKnown RBP14.82□□□□□ -0.04
VPS29-207ENST00000549970 CLCA1A8K7I4 914 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 NUDT17P0C025 328 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 SDC1P18827 310 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 OPRM1P35372 400 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 PEX19P40855 299 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 FBXL19-AS1Q494R0 122 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 GALNTL6Q49A17 601 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 RFTN2Q52LD8 501 aaPredicted RBP14.81□□□□□ -0.04
VPS29-207ENST00000549970 ZNF385BQ569K4 471 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 SZRD1Q7Z422 152 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 DDIASQ8IXT1 998 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 TWIST2Q8WVJ9 160 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 PPCDCQ96CD2 204 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 FCRL1Q96LA6 429 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 CCT7Q99832 543 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 GPATCH1Q9BRR8 931 aaKnown RBP14.81□□□□□ -0.04
VPS29-207ENST00000549970 LMF2Q9BU23 707 aaKnown RBP14.81□□□□□ -0.04
VPS29-207ENST00000549970 DSN1Q9H410 356 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 REEP4Q9H6H4 257 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 DNAJB12Q9NXW2 375 aaKnown RBP14.81□□□□□ -0.04
VPS29-207ENST00000549970 SH3BP4Q9P0V3 963 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 BAIAP2L1Q9UHR4 511 aa14.81□□□□□ -0.04
VPS29-207ENST00000549970 MRTO4Q9UKD2 239 aaKnown RBP14.81□□□□□ -0.04
VPS29-207ENST00000549970 MPDZO75970 2070 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 LSM1O15116 133 aaKnown RBP14.8□□□□□ -0.04
VPS29-207ENST00000549970 FADS1O60427 444 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 ZIC3O60481 467 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 NPHS1O60500 1241 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 IL33O95760 270 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 ZNF708P17019 499 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 GABRA3P34903 492 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 PRKAG1P54619 331 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 DSCR4P56555 118 aaPredicted RBP14.8□□□□□ -0.04
VPS29-207ENST00000549970 CLDN18P56856 261 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 FOXF2Q12947 444 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 FLYWCH1Q4VC44 716 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 ARL13AQ5H913 290 aaPredicted RBP14.8□□□□□ -0.04
VPS29-207ENST00000549970 RNF165Q6ZSG1 346 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 ZCCHC23Q6ZST2 131 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 FADS6Q8N9I5 356 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 OR2M3Q8NG83 312 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 ZFP28Q8NHY6 868 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 AGR3Q8TD06 166 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 TCP10LQ8TDR4 215 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 PIK3R3Q92569 461 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 INTS12Q96CB8 462 aaKnown RBP14.8□□□□□ -0.04
VPS29-207ENST00000549970 G6PC3Q9BUM1 346 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 POLDIP3Q9BY77 421 aaKnown RBP14.8□□□□□ -0.04
VPS29-207ENST00000549970 RTN4RQ9BZR6 473 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 MED11Q9P086 117 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 LGALS13Q9UHV8 139 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 FOXD3Q9UJU5 478 aaPredicted RBP14.8□□□□□ -0.04
VPS29-207ENST00000549970 ABCG2Q9UNQ0 655 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 MRPS18CQ9Y3D5 142 aaKnown RBP14.8□□□□□ -0.04
VPS29-207ENST00000549970 TRAF6Q9Y4K3 522 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 AKAP6Q13023 2319 aa14.8□□□□□ -0.04
VPS29-207ENST00000549970 GXYLT2A0PJZ3 443 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 PIP5K1BO14986 540 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 CTAG2O75638 210 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 IL18BPO95998 194 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 PRPS2P11908 318 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 HK1P19367 917 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 EFNA1P20827 205 aaPredicted RBP14.79□□□□□ -0.04
VPS29-207ENST00000549970 CHMP24386 653 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 PSMD4P55036 377 aaKnown RBP14.79□□□□□ -0.04
VPS29-207ENST00000549970 MANFP55145 182 aaKnown RBP14.79□□□□□ -0.04
VPS29-207ENST00000549970 TESK1Q15569 626 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 RAET1LQ5VY80 246 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 ADGRE4PQ86SQ3 457 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 MARCH3Q86UD3 253 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 MED12LQ86YW9 2145 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 GRAMD2AQ8IUY3 354 aa14.79□□□□□ -0.04
VPS29-207ENST00000549970 UBQLNLQ8IYU4 475 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms