RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 TP73O15350 636 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 CLOCKO15516 846 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 SCO2O43819 266 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 UGDHO60701 494 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 ALDOAP04075 364 aaKnown RBP11.4□□□□□ -0.58
SCAF11-208ENST00000546534 FCGR2AP12318 317 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 IL11P20809 199 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 IL12BP29460 328 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 KRT20P35900 424 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 MAPK12P53778 367 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 RPS3AP61247 264 aaKnown RBP11.4□□□□□ -0.58
SCAF11-208ENST00000546534 SRSF2Q01130 221 aaKnown RBP11.4□□□□□ -0.58
SCAF11-208ENST00000546534 FAPQ12884 760 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 SGCBQ16585 318 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 PFKFB4Q16877 469 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 CTU2Q2VPK5 515 aaKnown RBP11.4□□□□□ -0.58
SCAF11-208ENST00000546534 CMC1Q7Z7K0 106 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 ZBED8Q8IZ13 594 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 METTL25Q8N6Q8 603 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 GFM2Q969S9 779 aaKnown RBP11.4□□□□□ -0.58
SCAF11-208ENST00000546534 EFHD2Q96C19 240 aaPredicted RBP11.4□□□□□ -0.58
SCAF11-208ENST00000546534 KLHL29Q96CT2 875 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 CPNE1Q99829 537 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 NTMT1Q9BV86 223 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 BEX2Q9BXY8 128 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 IPPKQ9H8X2 491 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 MED11Q9P086 117 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 WHRNQ9P202 907 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 TXNDC16Q9P2K2 825 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 ADAM29Q9UKF5 820 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 GPR52Q9Y2T5 361 aa11.4□□□□□ -0.58
SCAF11-208ENST00000546534 PRR14LQ5THK1 2151 aa11.4□□□□□ -0.59
SCAF11-208ENST00000546534 A0A1W2PP18 115 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 GOLGA6L6A8MZA4 724 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 LINC01387J3KSC0 135 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 SS18L1O75177 396 aaPredicted RBP11.39□□□□□ -0.59
SCAF11-208ENST00000546534 GUCY1B2O75343 617 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 SEC31AO94979 1220 aaKnown RBP11.39□□□□□ -0.59
SCAF11-208ENST00000546534 PLGP00747 810 aaPredicted RBP11.39□□□□□ -0.59
SCAF11-208ENST00000546534 LTA4HP09960 611 aaKnown RBP11.39□□□□□ -0.59
SCAF11-208ENST00000546534 PSMB1P20618 241 aaKnown RBP11.39□□□□□ -0.59
SCAF11-208ENST00000546534 SSTR1P30872 391 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 GP5P40197 560 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 PNLIPRP2P54317 469 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 CTBP2P56545 445 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 GTF2H2Q13888 395 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 PGGHGQ32M88 737 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 NCMAPQ5T1S8 102 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 PPP4R4Q6NUP7 873 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 GTF2H2CQ6P1K8 395 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 NPSR1Q6W5P4 371 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 BEND4Q6ZU67 534 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 RAPH1Q70E73 1250 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 PAGE2Q7Z2X7 111 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 GOLGA7Q7Z5G4 137 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 GAS2L3Q86XJ1 694 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 NXNL1Q96CM4 212 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 CNRIP1Q96F85 164 aaPredicted RBP11.39□□□□□ -0.59
SCAF11-208ENST00000546534 GMPPAQ96IJ6 420 aaPredicted RBP11.39□□□□□ -0.59
SCAF11-208ENST00000546534 HS6ST2Q96MM7 605 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 ZNF681Q96N22 645 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 TACO1Q9BSH4 297 aaKnown RBP11.39□□□□□ -0.59
SCAF11-208ENST00000546534 PRRG4Q9BZD6 226 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 OR10A4Q9H209 315 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 ZBTB26Q9HCK0 441 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 FANCFQ9NPI8 374 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 PPP2R2CQ9Y2T4 447 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 ACOT9Q9Y305 439 aa11.39□□□□□ -0.59
SCAF11-208ENST00000546534 IGHV4-30-2A0A087WSY4 118 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 WIPF1O43516 503 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 CD8AP01732 235 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 CTAGE8P0CG41 777 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 GFAPP14136 432 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 STX5Q13190 355 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 GANABQ14697 944 aaKnown RBP11.38□□□□□ -0.59
SCAF11-208ENST00000546534 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.38□□□□□ -0.59
SCAF11-208ENST00000546534 TMEM249Q2WGJ8 235 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 ZNF672Q499Z4 452 aaPredicted RBP11.38□□□□□ -0.59
SCAF11-208ENST00000546534 COMMD6Q7Z4G1 85 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 TBC1D1Q86TI0 1168 aaPredicted RBP11.38□□□□□ -0.59
SCAF11-208ENST00000546534 ATG4DQ86TL0 474 aaPredicted RBP11.38□□□□□ -0.59
SCAF11-208ENST00000546534 GGNQ86UU5 652 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 CTAGE4Q8IX94 777 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 METTL4Q8N3J2 472 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 OR4N2Q8NGD1 307 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 TRPC4APQ8TEL6 797 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 CDKL2Q92772 493 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 S100PBPQ96BU1 408 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 TM4SF18Q96CE8 201 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 VSTM2LQ96N03 204 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 RHNO1Q9BSD3 238 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 RTN4RQ9BZR6 473 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 TRIM31Q9BZY9 425 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 FOLH1BQ9HBA9 442 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 BARX1Q9HBU1 254 aaPredicted RBP11.38□□□□□ -0.59
SCAF11-208ENST00000546534 SAYSD1Q9NPB0 183 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 TMEM160Q9NX00 188 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 AHSPQ9NZD4 102 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 PSME2Q9UL46 239 aa11.38□□□□□ -0.59
SCAF11-208ENST00000546534 AP4B1Q9Y6B7 739 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms