RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SLC6A4P31645 630 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 MECP2P51608 486 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 NUDT6P53370 316 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 KCNJ10P78508 379 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 VLDLRP98155 873 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 RBBP4Q09028 425 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 MED22Q15528 200 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 SOWAHCQ53LP3 525 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 C12orf73Q69YU5 71 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 LRRC28Q86X40 367 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 ARHGAP12Q8IWW6 846 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ATP6V1C2Q8NEY4 427 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 OR11H7Q8NGC8 314 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 FIBINQ8TAL6 211 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ZNF671Q8TAW3 534 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 NSMAFQ92636 917 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 HSH2DQ96JZ2 352 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 DOHHQ9BU89 302 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 CINPQ9BW66 212 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 CHST8Q9H2A9 424 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 SLC25A32Q9H2D1 315 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 MCCC2Q9HCC0 563 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 FGF20Q9NP95 211 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 SNTG1Q9NSN8 517 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 TMEM248Q9NWD8 314 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ASB6Q9NWX5 421 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 FAM120CQ9NX05 1096 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 MARCH2Q9P0N8 246 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 NLKQ9UBE8 527 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 SEC14L3Q9UDX4 400 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 MBD1Q9UIS9 605 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 TINAGQ9UJW2 476 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 SF3B6Q9Y3B4 125 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 POLR3HQ9Y535 204 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 SHROOM3Q8TF72 1996 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 COL27A1Q8IZC6 1860 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 C9JVG2 144 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 NEDD8-MDP1E9PL57 170 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 J3KR12 359 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 WRBO00258 174 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 DFFAO00273 331 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 CTDSPLO15194 276 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 CDRT1O95170 752 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ADAP00813 363 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 FGF1P05230 155 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 HEXAP06865 529 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 GIPP09681 153 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 SPI1P17947 270 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 EPHA2P29317 976 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 LCN1P31025 176 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 KIR2DL1P43626 348 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 BDKRB1P46663 353 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 INPP1P49441 399 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ARPP19P56211 112 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ERVPABLB-1P60509 514 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 RPS7P62081 194 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 TRA2BP62995 288 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 BDH1Q02338 343 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 HNRNPA0Q13151 305 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 DYRK1AQ13627 763 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ERV3-1Q14264 604 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 CCDC85BQ15834 202 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 RBBP7Q16576 425 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 GUCA2BQ16661 112 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 TMEM44Q2T9K0 475 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ITPRIPL2Q3MIP1 535 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 FAM174BQ3ZCQ3 159 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ZNF789Q5FWF6 425 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 DGKKQ5KSL6 1271 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 PDSS1Q5T2R2 415 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 PEAR1Q5VY43 1037 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 CNIH2Q6PI25 160 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 SCN4BQ8IWT1 228 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ARL14EPQ8N8R7 260 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 WFIKKN2Q8TEU8 576 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 SLC39A7Q92504 469 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 KCNJ9Q92806 393 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ZNF419Q96HQ0 510 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 COQ10AQ96MF6 247 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 OR52E6Q96RD3 313 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 UTP23Q9BRU9 249 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 KATNB1Q9BVA0 655 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 TRMT61BQ9BVS5 477 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 ELOVL6Q9H5J4 265 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 PDFQ9HBH1 243 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 SEMA4BQ9NPR2 832 aaPredicted RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 SPHK2Q9NRA0 654 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 RAD18Q9NS91 495 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 BABAM2Q9NXR7 383 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 CTSFQ9UBX1 484 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ERVK-19Q9WJR5 959 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 ZNF318Q5VUA4 2279 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 MYO18AQ92614 2054 aaKnown RBP4.95□□□□□ -1.62
USP28-213ENST00000544967 LRRK1Q38SD2 2015 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 PRAMEF33A0A0G2JMD5 474 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 PMS2P1A4D2B8 440 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 MYO1GB0I1T2 1018 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 E9PAM4 449 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 L7N2F9 121 aa4.95□□□□□ -1.62
USP28-213ENST00000544967 TNFRSF11BO00300 401 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms