RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 DKKL1Q9UK85 242 aa11.53□□□□□ -0.56
USP28-212ENST00000544750 ZNF175Q9Y473 711 aa11.53□□□□□ -0.56
USP28-212ENST00000544750 PCDHA9Q9Y5H5 950 aa11.53□□□□□ -0.56
USP28-212ENST00000544750 SYCE1LA8MT33 242 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 ABCB7O75027 752 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 REM1O75628 298 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 KLK1P06870 262 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 COL6A2P12110 1019 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 PPP3CBP16298 524 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 TCEA1P23193 301 aaKnown RBP11.52□□□□□ -0.57
USP28-212ENST00000544750 FEN1P39748 380 aaKnown RBP11.52□□□□□ -0.57
USP28-212ENST00000544750 PIK3CGP48736 1102 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 ALDH18A1P54886 795 aaKnown RBP11.52□□□□□ -0.57
USP28-212ENST00000544750 DSCR4P56555 118 aaPredicted RBP11.52□□□□□ -0.57
USP28-212ENST00000544750 VSNL1P62760 191 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 OCRLQ01968 901 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 FGFBP1Q14512 234 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 ETFDHQ16134 617 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 PFKFB4Q16877 469 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 ADAM5Q6NVV9 412 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 STAC2Q6ZMT1 411 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 UBQLNLQ8IYU4 475 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 TMEM151AQ8N4L1 468 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 ADCY4Q8NFM4 1077 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 LILRB1Q8NHL6 650 aaPredicted RBP11.52□□□□□ -0.57
USP28-212ENST00000544750 TRPC4APQ8TEL6 797 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 DTNBP1Q96EV8 351 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 PLPPR2Q96GM1 343 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 BTBD9Q96Q07 612 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 PINK1Q9BXM7 581 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 KLHL4Q9C0H6 718 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 PLSCR4Q9NRQ2 329 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 XPR1Q9UBH6 696 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 PRODH2Q9UF12 536 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 PROCRQ9UNN8 238 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 ZNF337Q9Y3M9 751 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 SVEP1Q4LDE5 3571 aa11.52□□□□□ -0.57
USP28-212ENST00000544750 C1orf226A1L170 272 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 GOLGA6L10A6NI86 522 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 AQP8O94778 261 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 SIX3O95343 332 aaPredicted RBP11.51□□□□□ -0.57
USP28-212ENST00000544750 DANCRP0C864 163 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 GFAPP14136 432 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 PCSK2P16519 638 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 CSNK2A2P19784 350 aaPredicted RBP11.51□□□□□ -0.57
USP28-212ENST00000544750 PNLIPRP2P54317 469 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 MRPS35P82673 323 aaKnown RBP11.51□□□□□ -0.57
USP28-212ENST00000544750 GTF2H2Q13888 395 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 VEZF1Q14119 521 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 PON3Q15166 354 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 LTB4RQ15722 352 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 TSNAXIP1Q2TAA8 658 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 GTF2H2CQ6P1K8 395 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 KLC3Q6P597 504 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 NPSR1Q6W5P4 371 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 FAM214BQ7L5A3 538 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 CHMP1BQ7LBR1 199 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 GOLGA7Q7Z5G4 137 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 METTL4Q8N3J2 472 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 METTL25Q8N6Q8 603 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.51□□□□□ -0.57
USP28-212ENST00000544750 TM4SF18Q96CE8 201 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 MTBPQ96DY7 904 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 CNRIP1Q96F85 164 aaPredicted RBP11.51□□□□□ -0.57
USP28-212ENST00000544750 ADOQ96SZ5 270 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 MRPL1Q9BYD6 325 aaKnown RBP11.51□□□□□ -0.57
USP28-212ENST00000544750 IPPKQ9H8X2 491 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 CPSF2Q9P2I0 782 aaKnown RBP11.51□□□□□ -0.57
USP28-212ENST00000544750 PSMC3IPQ9P2W1 217 aaPredicted RBP11.51□□□□□ -0.57
USP28-212ENST00000544750 LAMP3Q9UQV4 416 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 ANGPTL3Q9Y5C1 460 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 MALRD1Q5VYJ5 2156 aa11.51□□□□□ -0.57
USP28-212ENST00000544750 OR7A17O14581 309 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 PHF1O43189 567 aaPredicted RBP11.5□□□□□ -0.57
USP28-212ENST00000544750 NME6O75414 186 aaPredicted RBP11.5□□□□□ -0.57
USP28-212ENST00000544750 ERAL1O75616 437 aaKnown RBP11.5□□□□□ -0.57
USP28-212ENST00000544750 SLU7O95391 586 aaKnown RBP11.5□□□□□ -0.57
USP28-212ENST00000544750 SOD3P08294 240 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 IL11P20809 199 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 IDUAP35475 653 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 CLDN20P56880 219 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 CORO7P57737 925 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 EEFSECP57772 596 aaKnown RBP11.5□□□□□ -0.57
USP28-212ENST00000544750 RPS4XP62701 263 aaKnown RBP11.5□□□□□ -0.57
USP28-212ENST00000544750 EFR3AQ14156 821 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 ZNF628Q5EBL2 1059 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 CCNYL2Q5T2Q4 361 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 C10orf62Q5T681 223 aaPredicted RBP11.5□□□□□ -0.57
USP28-212ENST00000544750 FAM180BQ6P0A1 224 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 PTGR2Q8N8N7 351 aaPredicted RBP11.5□□□□□ -0.57
USP28-212ENST00000544750 OR2M3Q8NG83 312 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 ZNF675Q8TD23 568 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 UBLCP1Q8WVY7 318 aaPredicted RBP11.5□□□□□ -0.57
USP28-212ENST00000544750 AKAP1Q92667 903 aaKnown RBP eCLIP11.5□□□□□ -0.57
USP28-212ENST00000544750 VSTM2LQ96N03 204 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 CDK15Q96Q40 435 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 SLCO5A1Q9H2Y9 848 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 DSN1Q9H410 356 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 ANKRA2Q9H9E1 313 aa11.5□□□□□ -0.57
USP28-212ENST00000544750 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms