RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 GK2Q14410 553 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-215ENST00000544547 GPR155Q7Z3F1 870 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ADGRF3Q8IZF5 1079 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ZDHHC1Q8WTX9 485 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 AUTS2Q8WXX7 1259 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 OSTF1Q92882 214 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 C5orf34Q96MH7 638 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 MCHR1Q99705 422 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 BCL2L14Q9BZR8 327 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 LINC00597Q9H2U6 94 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ASF1BQ9NVP2 202 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 TXNL1O43396 289 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 PAK4O96013 591 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-215ENST00000544547 HSD3B1P14060 373 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF14P17017 642 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ETV5P41161 510 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 STK19P49842 368 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-215ENST00000544547 CLCN7P51798 805 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 TRAM2Q15035 370 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 PRAMEF13Q5VWM6 474 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 PODNL1Q6PEZ8 512 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF852Q6ZMS4 543 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 LRRC28Q86X40 367 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-215ENST00000544547 CYB561A3Q8NBI2 242 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 OR52I1Q8NGK6 324 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 THAP6Q8TBB0 222 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 CDCA4Q9BXL8 241 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 SPNS1Q9H2V7 528 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF768Q9H5H4 540 aaKnown RBP13.45□□□□□ -0.26
LIMS1-215ENST00000544547 REV1Q9UBZ9 1251 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 PCDHGA2Q9Y5H1 932 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 A0A1B0GVT2 93 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 RGS11O94810 467 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 SNRPBP14678 240 aaKnown RBP13.45□□□□□ -0.26
LIMS1-215ENST00000544547 PTH2RP49190 550 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 VEGFCP49767 419 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 KCNJ10P78508 379 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 TIGD3Q6B0B8 471 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 FCRLBQ6BAA4 426 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 SLC25A24Q6NUK1 477 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 MSANTD1Q6ZTZ1 278 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 SERINC5Q86VE9 423 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 CHCHD4Q8N4Q1 142 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 ZCCHC10Q8TBK6 192 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 FBXW5Q969U6 566 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 STOX2Q9P2F5 926 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-215ENST00000544547 COLEC10Q9Y6Z7 277 aa13.45□□□□□ -0.26
LIMS1-215ENST00000544547 H7C0S8 307 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 COCHO43405 550 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 MMP20O60882 483 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 FZD7O75084 574 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 SLC16A8O95907 504 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 SLC35G6P0C7Q6 338 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 ELK1P19419 428 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 RPL34P49207 117 aaKnown RBP13.44□□□□□ -0.26
LIMS1-215ENST00000544547 KHKP50053 298 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 METTL11BQ5VVY1 283 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 VITQ6UXI7 678 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 BEST3Q8N1M1 668 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 C10orf111Q8N326 155 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 OR2T33Q8NG76 320 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 CNOT9Q92600 299 aaKnown RBP13.44□□□□□ -0.26
LIMS1-215ENST00000544547 RBM18Q96H35 190 aaKnown RBP13.44□□□□□ -0.26
LIMS1-215ENST00000544547 CD180Q99467 661 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 TMEM43Q9BTV4 400 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 WDR26Q9H7D7 661 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 FBXL2Q9UKC9 423 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 ASB4Q9Y574 426 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 PHIPQ8WWQ0 1821 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 MMP2P08253 660 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 PRR35P0CG20 571 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 GTF2F2P13984 249 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 AHRP35869 848 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 AKR1C2P52895 323 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 AKR1C1Q04828 323 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 TSC22D1Q15714 1073 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 SSX1Q16384 188 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 FAM76BQ5HYJ3 339 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 MPP7Q5T2T1 576 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 UNC5DQ6UXZ4 953 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 OLIG3Q7RTU3 272 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 PRSS45Q7RTY3 260 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 TRIM46Q7Z4K8 759 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 RDH10Q8IZV5 341 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 STOML3Q8TAV4 291 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 APH1BQ8WW43 257 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 SUV39H2Q9H5I1 410 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 PADI2Q9Y2J8 665 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF623O75123 536 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 NFYAP23511 347 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-215ENST00000544547 CMPK1P30085 196 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 PRMT2P55345 433 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 PRR5P85299 388 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 HYAL2Q12891 473 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 FAHD1Q6P587 224 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 GALNTL5Q7Z4T8 443 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 FBXO15Q8NCQ5 510 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-215ENST00000544547 OR5D16Q8NGK9 328 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 GNPDA2Q8TDQ7 276 aa13.44□□□□□ -0.26
LIMS1-215ENST00000544547 C2CD4CQ8TF44 421 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms