RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 G3V2L1 256 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 PLOD2O00469 737 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 CHEK2O96017 543 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 PROCP04070 461 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 CRHP06850 196 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 FAM153BP0C7A2 387 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 UROSP10746 265 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 ZNF708P17019 499 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 DDX5P17844 614 aaKnown RBP11.9□□□□□ -0.5
RTN3-212ENST00000543123 CRHR1P34998 444 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 MC3RP41968 323 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 AGFG1P52594 562 aaKnown RBP11.9□□□□□ -0.5
RTN3-212ENST00000543123 FAM153CQ494X1 144 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 VPS26BQ4G0F5 336 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 SH2D4BQ5SQS7 431 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 NOXRED1Q6NXP6 359 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 TMEM107Q6UX40 140 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 P4HA3Q7Z4N8 544 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 OR2L13Q8N349 312 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 MEIOBQ8N635 442 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 DACH2Q96NX9 599 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 ALPK1Q96QP1 1244 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 FAM120CQ9NX05 1096 aaKnown RBP11.9□□□□□ -0.5
RTN3-212ENST00000543123 CLCF1Q9UBD9 225 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 EMCNQ9ULC0 261 aa11.9□□□□□ -0.5
RTN3-212ENST00000543123 POLR3HQ9Y535 204 aaPredicted RBP11.9□□□□□ -0.5
RTN3-212ENST00000543123 AKAP6Q13023 2319 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 SLC28A1O00337 649 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 UBFD1O14562 309 aaKnown RBP11.89□□□□□ -0.51
RTN3-212ENST00000543123 COPEO14579 308 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 RGS14O43566 566 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 SCO2O43819 266 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 PLIN3O60664 434 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 KCNH1O95259 989 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 NEFHP12036 1026 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 PEPDP12955 493 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 CD99P14209 185 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 CPA3P15088 417 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 SLCO1A2P46721 670 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 GAS1P54826 345 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 FOXA1P55317 472 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 CLDN18P56856 261 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 PSG6Q00889 435 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 FGFBP1Q14512 234 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 RAET1LQ5VY80 246 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 LIPMQ5VYY2 423 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 FAM219BQ5XKK7 198 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 OR5M10Q6IEU7 315 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 PAMR1Q6UXH9 720 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 LUZP2Q86TE4 346 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 TDRPQ86YL5 185 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 ZFP28Q8NHY6 868 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.89□□□□□ -0.51
RTN3-212ENST00000543123 UBLCP1Q8WVY7 318 aaPredicted RBP11.89□□□□□ -0.51
RTN3-212ENST00000543123 INTS12Q96CB8 462 aaKnown RBP11.89□□□□□ -0.51
RTN3-212ENST00000543123 MBD6Q96DN6 1003 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 ZNF764Q96H86 408 aaPredicted RBP11.89□□□□□ -0.51
RTN3-212ENST00000543123 AMDHD1Q96NU7 426 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 TRMOQ9BU70 441 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 OXSMQ9NWU1 459 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 GALNT8Q9NY28 637 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 STOML1Q9UBI4 398 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 NDRG3Q9UGV2 375 aa11.89□□□□□ -0.51
RTN3-212ENST00000543123 RPH3AQ9Y2J0 694 aaPredicted RBP11.89□□□□□ -0.51
RTN3-212ENST00000543123 A0A1W2PPM1 405 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 SLC22A20A6NK97 555 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 UPK1AO00322 258 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 CASKO14936 926 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 PDPK1O15530 556 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 HCRTR2O43614 444 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 ZIC3O60481 467 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 SEC22BO75396 215 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 PSMG1O95456 288 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 IL33O95760 270 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 RAF1P04049 648 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 PRPH2P23942 346 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 GPC1P35052 558 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 STARP49675 285 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 FOXF2Q12947 444 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 KEAP1Q14145 624 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 TGIF2LYQ8IUE0 185 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 GCNT2Q8N0V5 402 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 FADS6Q8N9I5 356 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 OR2M3Q8NG83 312 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 OR4N2Q8NGD1 307 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.88□□□□□ -0.51
RTN3-212ENST00000543123 ELP4Q96EB1 424 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 CCT7Q99832 543 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 PIGQQ9BRB3 760 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 TBL1XR1Q9BZK7 514 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 DSN1Q9H410 356 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 GLIPR2Q9H4G4 154 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 C1orf109Q9NX04 203 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 PLEKHA6Q9Y2H5 1048 aa11.88□□□□□ -0.51
RTN3-212ENST00000543123 KIAA1549Q9HCM3 1950 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 ABCA4P78363 2273 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 A0A1W2PNV4 684 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 SH3D21A4FU49 640 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 SMIM23A6NLE4 172 aa11.87□□□□□ -0.51
RTN3-212ENST00000543123 NPIPB8E9PQR5 432 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms