RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 MED22Q15528 200 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 TATDN3Q17R31 274 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 FLYWCH1Q4VC44 716 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PDZK1Q5T2W1 519 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PIP5KL1Q5T9C9 394 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 GPR139Q6DWJ6 353 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 KLHL17Q6TDP4 642 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SLC46A3Q7Z3Q1 461 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 LAX1Q8IWV1 398 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 STX19Q8N4C7 294 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 LILRA3Q8N6C8 439 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SETD6Q8TBK2 473 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ADAMTS14Q8WXS8 1223 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 RNF31Q96EP0 1072 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 CLUHP3Q96NS8 147 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 EGFL8Q99944 293 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 RPP25Q9BUL9 199 aaKnown RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 HDAC8Q9BY41 377 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 GSDMCQ9BYG8 508 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 NXF2Q9GZY0 626 aaKnown RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ACTL8Q9H568 366 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 RERGLQ9H628 205 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SLC28A3Q9HAS3 691 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SMURF1Q9HCE7 757 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 TAS2R16Q9NYV7 291 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 VAPAQ9P0L0 249 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 H2AFY2Q9P0M6 372 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 CLCA3PQ9Y6N3 262 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 A3GALT2U3KPV4 340 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PIPSLA2A3N6 862 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 FAM234BA2RU67 622 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 UGDHO60701 494 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PRAMEF4O60810 478 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 STK16O75716 305 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 KAT7O95251 611 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ANXA5P08758 320 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 EBLN1P0CF75 366 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 TRAPPC2P0DI81 140 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 TRAPPC2BP0DI82 140 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ITGAMP11215 1152 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 P2RY2P41231 377 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SLC1A3P43003 542 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 GBX2P52951 348 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 MXD1Q05195 221 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 DPTQ07507 201 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 DLX2Q07687 328 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ELP6Q0PNE2 266 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 TMEM115Q12893 351 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 FAM189A2Q15884 450 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF674Q2M3X9 581 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 C2orf27AQ580R0 203 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ACER2Q5QJU3 275 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PRAMEF9Q5VWM5 478 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 GPR153Q6NV75 609 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PLET1Q6UQ28 207 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 DLEU7Q6UYE1 221 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 LRRC70Q7Z2Q7 622 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 COMMD7Q86VX2 200 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 VWA5B2Q8N398 1253 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF511Q8NB15 262 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 CPEB3Q8NE35 698 aaKnown RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 RNASE11Q8TAA1 199 aaKnown RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PROKR1Q8TCW9 393 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 USP7Q93009 1102 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 CCNL2Q96S94 520 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SPATA9Q9BWV2 254 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 EPHX3Q9H6B9 360 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 KRT84Q9NSB2 600 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SNTG1Q9NSN8 517 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ARL15Q9NXU5 204 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 GPR83Q9NYM4 423 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ACTR10Q9NZ32 417 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 GPN3Q9UHW5 284 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PDE4DIPQ5VU43 2346 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 ELOVL7A1L3X0 281 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 TBC1D3BA6NDS4 549 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 FOXE1O00358 373 aaPredicted RBP7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 MMP20O60882 483 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 WBP4O75554 376 aaKnown RBP7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 SLC22A5O76082 557 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 LAMP2P13473 410 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 DRD3P35462 400 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 SLC19A1P41440 591 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 RGS6P49758 472 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 CXCR4P61073 352 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 HYAL2Q12891 473 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 GGTA1PQ4G0N0 100 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 IL27RAQ6UWB1 636 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 TFAP2EQ6VUC0 442 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 ERN2Q76MJ5 926 aaKnown RBP7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 TRIM46Q7Z4K8 759 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 ZDHHC21Q8IVQ6 265 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 MCATQ8IVS2 390 aaKnown RBP7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 KLHDC8AQ8IYD2 350 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 CLRN3Q8NCR9 226 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 FBLIM1Q8WUP2 373 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 NUS1Q96E22 293 aa7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 PELOQ9BRX2 385 aaKnown RBP7.52□□□□□ -1.21
PDLIM5-221ENST00000542407 TWSG1Q9GZX9 223 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms