RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 R3HDM4Q96D70 268 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 TSPAN17Q96FV3 270 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 LCORQ96JN0 433 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-214ENST00000540539 CCNL2Q96S94 520 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-214ENST00000540539 MAGEB5Q9BZ81 275 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 ALG9Q9H6U8 611 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 CISHQ9NSE2 258 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 MGAT4CQ9UBM8 478 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 RPS6KB2Q9UBS0 482 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 KCNIP3Q9Y2W7 256 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 KCTD3Q9Y597 815 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 TMEM150BA6NC51 233 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 EREGO14944 169 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 HNRNPDLO14979 420 aaKnown RBP8.91□□□□□ -0.98
CLIP1-214ENST00000540539 SOX15O60248 233 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 GRAP2O75791 330 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 SNAPC5O75971 98 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 NCR1O76036 304 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 CD2P06729 351 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 GIPP09681 153 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-214ENST00000540539 STAG3L1P0CL83 205 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 LAG3P18627 525 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 C5AR1P21730 350 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 PTPN6P29350 595 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 SHC1P29353 583 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 SCNN1AP37088 669 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 CSNK1EP49674 416 aaKnown RBP8.91□□□□□ -0.98
CLIP1-214ENST00000540539 RAB5CP51148 216 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 ITGA1P56199 1179 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 MRPS11P82912 194 aaKnown RBP8.91□□□□□ -0.98
CLIP1-214ENST00000540539 CACNB2Q08289 660 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-214ENST00000540539 IFRD2Q12894 506 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-214ENST00000540539 INPP5JQ15735 1006 aaPredicted RBP8.91□□□□□ -0.98
CLIP1-214ENST00000540539 MFSD14CQ5VZR4 134 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 KIAA1211LQ6NV74 962 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 B3GLCTQ6Y288 498 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 RNF165Q6ZSG1 346 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 TMPRSS11FQ6ZWK6 438 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 OR56A3Q8NH54 315 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 CHTF18Q8WVB6 975 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 EXT2Q93063 718 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 VOPP1Q96AW1 172 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 FUBP3Q96I24 572 aaKnown RBP eCLIP8.91□□□□□ -0.98
CLIP1-214ENST00000540539 PIWIL1Q96J94 861 aaKnown RBP8.91□□□□□ -0.98
CLIP1-214ENST00000540539 MESP1Q9BRJ9 268 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 REEP1Q9H902 201 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 SLC25A37Q9NYZ2 338 aa8.91□□□□□ -0.98
CLIP1-214ENST00000540539 OR2M5A3KFT3 312 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 GABRR3A8MPY1 467 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 J3KR12 359 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 LRRTM2O43300 516 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 CRYABP02511 175 aaKnown RBP8.9□□□□□ -0.98
CLIP1-214ENST00000540539 ZNF865P0CJ78 1059 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-214ENST00000540539 ELK1P19419 428 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 RAB8AP61006 207 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 RAP2BP61225 183 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 MLLT11Q13015 90 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-214ENST00000540539 ZNHIT3Q15649 155 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-214ENST00000540539 ATPAF1Q5TC12 328 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-214ENST00000540539 NCBP2-AS2Q69YL0 99 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 ETFRF1Q6IPR1 90 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 PAPD4Q6PIY7 484 aaKnown RBP8.9□□□□□ -0.98
CLIP1-214ENST00000540539 METTL7BQ6UX53 244 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 CFAP206Q8IYR0 622 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 C15orf54Q8N8G6 183 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 OR5B17Q8NGF7 314 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 RPLP0P6Q8NHW5 317 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 OSTF1Q92882 214 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 MENTQ9BUN1 341 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 ACTL8Q9H568 366 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 NPDC1Q9NQX5 325 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-214ENST00000540539 GRHPRQ9UBQ7 328 aa8.9□□□□□ -0.98
CLIP1-214ENST00000540539 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.9□□□□□ -0.99
CLIP1-214ENST00000540539 NCF1BA6NI72 391 aaPredicted RBP8.9□□□□□ -0.99
CLIP1-214ENST00000540539 NCF1CA8MVU1 366 aaPredicted RBP8.9□□□□□ -0.99
CLIP1-214ENST00000540539 GFYI3L273 518 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 DLEU1O43261 78 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 DPM1O60762 260 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 AP2A1O95782 977 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 ESR1P03372 595 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 FABP3P05413 133 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 DRD5P21918 477 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 OMPP47874 163 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 RABGGTBP53611 331 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 IL10RBQ08334 325 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 SLC36A2Q495M3 483 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 PAQR6Q6TCH4 344 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF783Q6ZMS7 281 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 VTCN1Q7Z7D3 282 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 OR56B4Q8NH76 319 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF385AQ96PM9 386 aaKnown RBP8.9□□□□□ -0.99
CLIP1-214ENST00000540539 F2RL3Q96RI0 385 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 CHST5Q9GZS9 411 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 MTG2Q9H4K7 406 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 C1orf109Q9NX04 203 aa8.9□□□□□ -0.99
CLIP1-214ENST00000540539 FXYD6-FXYD2A0A087WZ82 144 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 HMSDA8MTL9 139 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 A8MXE2 369 aa8.89□□□□□ -0.99
CLIP1-214ENST00000540539 PRR23D1E9PI22 279 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-214ENST00000540539 HAS3O00219 553 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms