RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 RHEBL1Q8TAI7 183 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 GMPPAQ96IJ6 420 aaPredicted RBP10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 ZNF681Q96N22 645 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 RHNO1Q9BSD3 238 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 TACO1Q9BSH4 297 aaKnown RBP10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 BEX2Q9BXY8 128 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 MRPL1Q9BYD6 325 aaKnown RBP10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 PRRG4Q9BZD6 226 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 AMBRA1Q9C0C7 1298 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 PTGES2Q9H7Z7 377 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 SAYSD1Q9NPB0 183 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 SDHAF3Q9NRP4 125 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 TMEM160Q9NX00 188 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 MED11Q9P086 117 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 RNF115Q9Y4L5 304 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 MAGED1Q9Y5V3 778 aaPredicted RBP10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 AP4B1Q9Y6B7 739 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 ZNF780BQ9Y6R6 833 aa10.41□□□□□ -0.74
CLSTN3-209ENST00000539982 CLOCKO15516 846 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 SS18L1O75177 396 aaPredicted RBP10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 CD3EP07766 207 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 GFAPP14136 432 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 PSMB1P20618 241 aaKnown RBP10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 CRABP2P29373 138 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 SLC6A8P48029 635 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 NCMAPQ5T1S8 102 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 C6orf52Q5T4I8 152 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 GRTP1Q5TC63 336 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 FRG2Q64ET8 278 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 METTL2BQ6P1Q9 378 aaKnown RBP10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 CMC1Q7Z7K0 106 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 STK32CQ86UX6 486 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 STEAP2Q8NFT2 490 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 ZNF675Q8TD23 568 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 PYROXD1Q8WU10 500 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 TM4SF18Q96CE8 201 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 NXNL1Q96CM4 212 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 KLHL29Q96CT2 875 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 ERP27Q96DN0 273 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 C11orf24Q96F05 449 aaPredicted RBP10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 CNRIP1Q96F85 164 aaPredicted RBP10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 HS6ST2Q96MM7 605 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 VSTM2LQ96N03 204 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 FRG2BQ96QU4 278 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 KCNK17Q96T54 332 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 NTMT1Q9BV86 223 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 C19orf24Q9BVV8 132 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 HDHD5Q9BXW7 423 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 ESRP2Q9H6T0 727 aaKnown RBP10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 ANKRA2Q9H9E1 313 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 LRTM1Q9HBL6 345 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 BARX1Q9HBU1 254 aaPredicted RBP10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 CLEC4AQ9UMR7 237 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 SNX12Q9UMY4 172 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 TNPO3Q9Y5L0 923 aaKnown RBP10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 SAR1BQ9Y6B6 198 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 PRR14LQ5THK1 2151 aa10.4□□□□□ -0.74
CLSTN3-209ENST00000539982 A0A1W2PP18 115 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 CCDC189A1A4V9 331 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 FAM159BA6NKW6 160 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 SCO2O43819 266 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 FADS1O60427 444 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 NDUFS7O75251 213 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 NME6O75414 186 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 FESP07332 822 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 TCP1P17987 556 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 EVI2BP34910 448 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 DR1Q01658 176 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 PGGHGQ32M88 737 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 ZNF672Q499Z4 452 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 ZNF628Q5EBL2 1059 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 ALKBH2Q6NS38 261 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 FAM180BQ6P0A1 224 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 NPSR1Q6W5P4 371 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 COMMD6Q7Z4G1 85 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 GGNQ86UU5 652 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 EXOC3L1Q86VI1 746 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 CCDC116Q8IYX3 515 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 OR4N2Q8NGD1 307 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 UHMK1Q8TAS1 419 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 DUSP19Q8WTR2 217 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 NEUROG1Q92886 237 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 ATP6V1E2Q96A05 226 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 S100PBPQ96BU1 408 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 EFHD2Q96C19 240 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 C1GALT1C1Q96EU7 318 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 CDK15Q96Q40 435 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 FAIM2Q9BWQ8 316 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 GRIP2Q9C0E4 1043 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 NOL11Q9H8H0 719 aaKnown RBP10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 L2HGDHQ9H9P8 463 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 ZBTB26Q9HCK0 441 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 NGBQ9NPG2 151 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 GLRX2Q9NS18 164 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 PAQR5Q9NXK6 330 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 STOML1Q9UBI4 398 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 LPAR3Q9UBY5 353 aa10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 GDF2Q9UK05 429 aaPredicted RBP10.39□□□□□ -0.75
CLSTN3-209ENST00000539982 SNX8Q9Y5X2 465 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms