RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SLMAPQ14BN4 828 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 TSC22D1Q15714 1073 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 TMEM35AQ53FP2 167 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 TCHHL1Q5QJ38 904 aaPredicted RBP8.12□□□□□ -1.11
USP28-205ENST00000537706 LRIG3Q6UXM1 1119 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 RBMS3Q6XE24 437 aaKnown RBP8.12□□□□□ -1.11
USP28-205ENST00000537706 FBF1Q8TES7 1133 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 ADIPOR1Q96A54 375 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 MAGOHBQ96A72 148 aaKnown RBP8.12□□□□□ -1.11
USP28-205ENST00000537706 MFSD3Q96ES6 412 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 LINGO1Q96FE5 620 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 REXO5Q96IC2 774 aaKnown RBP8.12□□□□□ -1.11
USP28-205ENST00000537706 PKNOX2Q96KN3 472 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 ZIM3Q96PE6 472 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 SOX7Q9BT81 388 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 PTGES2Q9H7Z7 377 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 FKRPQ9H9S5 495 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 ZMAT3Q9HA38 289 aaKnown RBP8.12□□□□□ -1.11
USP28-205ENST00000537706 NTN4Q9HB63 628 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 MYNNQ9NPC7 610 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 FBXO6Q9NRD1 293 aaPredicted RBP8.12□□□□□ -1.11
USP28-205ENST00000537706 TAS2R13Q9NYV9 303 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 PPP4R1LQ9P1A2 415 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 SLC22A14Q9Y267 594 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 ATP23Q9Y6H3 246 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 SVEP1Q4LDE5 3571 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 M0QZ24 198 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 AIFM1O95831 613 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 ADAP00813 363 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 IFNB1P01574 187 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 SLC35E2BP0CK96 405 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 SLC35E2P0CK97 266 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 EPB42P16452 691 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 HIST1H1TP22492 207 aaPredicted RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 GRK2P25098 689 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 ARNTP27540 789 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 GCH1P30793 250 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 B3GALT5-AS1P59052 145 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 SNRPD2P62316 118 aaKnown RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 HIST2H2ACQ16777 129 aaPredicted RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 TSNAXIP1Q2TAA8 658 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 HIST2H2AA3Q6FI13 130 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 TTC27Q6P3X3 843 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 CCDC137Q6PK04 289 aaKnown RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 CES3Q6UWW8 571 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 ZNF771Q7L3S4 317 aaPredicted RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 ATG4DQ86TL0 474 aaPredicted RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 P2RY8Q86VZ1 359 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 GABRG1Q8N1C3 465 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 OR52B6Q8NGF0 335 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 CALML6Q8TD86 181 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 UBE2FQ969M7 185 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 NXNL1Q96CM4 212 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 MTBPQ96DY7 904 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 F2RL3Q96RI0 385 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 CCT8L2Q96SF2 557 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 FMO2Q99518 471 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 CENPKQ9BS16 269 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 SMYD2Q9NRG4 433 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 ING1Q9UK53 422 aaPredicted RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 ZNF337Q9Y3M9 751 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 MED12Q93074 2177 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 NPIPA5A0A0B4J1W7 369 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 TCRBV7S2A1N4TA0A589 114 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 NPIPA7E9PJI5 369 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 H0YC42 278 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 EIF1AYO14602 144 aaKnown RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 CLGNO14967 610 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 CLPSP04118 112 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 TACSTD2P09758 323 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 NPIPA8P0DM63 369 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 DDX5P17844 614 aaKnown RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 AGTR1P30556 359 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 APOBEC3AP31941 199 aaPredicted RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 GYS2P54840 703 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 TPD52P55327 224 aaPredicted RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 PHC1P78364 1004 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 MRPS22P82650 360 aaKnown RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 TNFRSF17Q02223 184 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 EFR3AQ14156 821 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 TIMM23BQ5SRD1 257 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 ARMC3Q5W041 872 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 SLC46A3Q7Z3Q1 461 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 GPR180Q86V85 440 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 TDRPQ86YL5 185 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 LMNTD2Q8IXW0 634 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 TOR1AIP2Q8NFQ8 470 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 FAM76AQ8TAV0 307 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 COL21A1Q96P44 957 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 EGFL8Q99944 293 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 VRK1Q99986 396 aaPredicted RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 INPP5KQ9BT40 448 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 NXF5Q9H1B4 397 aaKnown RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 DPH5Q9H2P9 285 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 SDHAF3Q9NRP4 125 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 ZDHHC18Q9NUE0 388 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 FBXO9Q9UK97 447 aaPredicted RBP8.11□□□□□ -1.11
USP28-205ENST00000537706 SOX13Q9UN79 622 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 SPEF1Q9Y4P9 236 aa8.11□□□□□ -1.11
USP28-205ENST00000537706 GOLGA8QA0A0J9YX86 632 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms