RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SPP2Q13103 211 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 TGIF1Q15583 401 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 CD226Q15762 336 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 UBE2V2Q15819 145 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ZIC1Q15915 447 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 CAMK4Q16566 473 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 TIMM50Q3ZCQ8 353 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 PRR30Q53SZ7 412 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 CYBRD1Q53TN4 286 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ZNF311Q5JNZ3 666 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 LGSNQ5TDP6 509 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ZNF658Q5TYW1 1059 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 C12orf60Q5U649 245 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 WDR25Q64LD2 544 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 RFWD3Q6PCD5 774 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 C2orf66Q6UXQ4 117 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 UNC5DQ6UXZ4 953 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 PAQR9Q6ZVX9 377 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 CATSPER4Q7RTX7 472 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 SYVN1Q86TM6 617 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 AMZ2Q86W34 360 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 PARGQ86W56 976 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 EFCAB13Q8IY85 973 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 CCDC36Q8IYA8 594 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 CENPLQ8N0S6 344 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 BCORP1Q8N888 145 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ZSCAN4Q8NAM6 433 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 ZNRF1Q8ND25 227 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 KLHL30-AS1Q8NEE0 82 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ZNF397Q8NF99 534 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 OR6T1Q8NGN1 323 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 DQX1Q8TE96 717 aaKnown RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 IL1F10Q8WWZ1 152 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 DLX4Q92988 240 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 ART4Q93070 314 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ZNF414Q96IQ9 312 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ZIM3Q96PE6 472 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 TTYH2Q9BSA4 534 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ST6GALNAC5Q9BVH7 336 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ZNF416Q9BWM5 594 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 CRNKL1Q9BZJ0 848 aaKnown RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 ELOVL4Q9GZR5 314 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 GLT8D2Q9H1C3 349 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 HSD3B7Q9H2F3 369 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 LPAR2Q9HBW0 351 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 EXOSC3Q9NQT5 275 aaKnown RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 NANSQ9NR45 359 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ELOVL2Q9NXB9 296 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 RCOR3Q9P2K3 495 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 GALPQ9UBC7 116 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 P2RX2Q9UBL9 471 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 SMC3Q9UQE7 1217 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 EIF3LQ9Y262 564 aaKnown RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 ZNF256Q9Y2P7 627 aaPredicted RBP2.1□□□□□ -2.07
CD44-238ENST00000534296 AP1M2Q9Y6Q5 423 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 U3KQV3 271 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 ATP8B3O60423 1300 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 FAM205AQ6ZU69 1335 aa2.1□□□□□ -2.07
CD44-238ENST00000534296 PTPRUQ92729 1446 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 A0A087WZY1 265 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 A8MUI8 341 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 E9PMD0 336 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 G3V3Y1 287 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 SGK494L7N484 410 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 PDXKO00764 312 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 MAPK13O15264 365 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 SRPX2O60687 465 aaPredicted RBP2.09□□□□□ -2.07
CD44-238ENST00000534296 STX11O75558 287 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 OAS1P00973 400 aaKnown RBP2.09□□□□□ -2.07
CD44-238ENST00000534296 HCKP08631 526 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 CCDC159P0C7I6 412 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 UMPSP11172 480 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 ANXA3P12429 323 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 CALB2P22676 271 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 CYP2F1P24903 491 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 DPP4P27487 766 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 DRD3P35462 400 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 TRIM23P36406 574 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 P2RY4P51582 365 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 SLC25A1P53007 311 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 NTHL1P78549 312 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 ZP4Q12836 540 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 EXOSC2Q13868 293 aaKnown RBP2.09□□□□□ -2.07
CD44-238ENST00000534296 RFTN1Q14699 578 aaPredicted RBP2.09□□□□□ -2.07
CD44-238ENST00000534296 CEBPEQ15744 281 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 GSG1Q2KHT4 349 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 CCDC57Q2TAC2 916 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 PAGE2BQ5JRK9 111 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 SEL1L2Q5TEA6 688 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 BLOC1S2Q6QNY1 142 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 CCBE1Q6UXH8 406 aaPredicted RBP2.09□□□□□ -2.07
CD44-238ENST00000534296 ISLR2Q6UXK2 745 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 ARFGAP2Q8N6H7 521 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 MRAPQ8TCY5 172 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 THRSPQ92748 146 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 P3H4Q92791 437 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 CCDC51Q96ER9 411 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 DNAJA3Q96EY1 480 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 PPP1R16AQ96I34 528 aa2.09□□□□□ -2.07
CD44-238ENST00000534296 AKR1E2Q96JD6 320 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms