RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SMNDC1O75940 238 aaKnown RBP eCLIP13.35□□□□□ -0.27
VPS28-215ENST00000531924 PEPDP12955 493 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 ZNF708P17019 499 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 HK1P19367 917 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 CCT5P48643 541 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 PSMD4P55036 377 aaKnown RBP13.35□□□□□ -0.27
VPS28-215ENST00000531924 POU4F3Q15319 338 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 BCL2A1Q16548 175 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 PLXDC2Q6UX71 529 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 ZYG11AQ6WRX3 759 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 CNEP1R1Q8N9A8 125 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 FAM76AQ8TAV0 307 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 MBD6Q96DN6 1003 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 RHOXF2Q9BQY4 288 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 GSTO2Q9H4Y5 243 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 C3orf14Q9HBI5 128 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 SIRT5Q9NXA8 310 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 CLCF1Q9UBD9 225 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 ABCG2Q9UNQ0 655 aa13.35□□□□□ -0.27
VPS28-215ENST00000531924 POLR3HQ9Y535 204 aaPredicted RBP13.35□□□□□ -0.27
VPS28-215ENST00000531924 UQCRHLA0A096LP55 91 aa13.34□□□□□ -0.27
VPS28-215ENST00000531924 SERTM1A2A2V5 107 aa13.34□□□□□ -0.27
VPS28-215ENST00000531924 ZIC3O60481 467 aa13.34□□□□□ -0.27
VPS28-215ENST00000531924 GPC1P35052 558 aa13.34□□□□□ -0.27
VPS28-215ENST00000531924 CLDN18P56856 261 aa13.34□□□□□ -0.27
VPS28-215ENST00000531924 GANABQ14697 944 aaKnown RBP13.34□□□□□ -0.27
VPS28-215ENST00000531924 FAM111AQ96PZ2 611 aa13.34□□□□□ -0.27
VPS28-215ENST00000531924 TBL1XR1Q9BZK7 514 aa13.34□□□□□ -0.27
VPS28-215ENST00000531924 IQCGQ9H095 443 aaKnown RBP13.34□□□□□ -0.27
VPS28-215ENST00000531924 NEUROD4Q9HD90 331 aa13.34□□□□□ -0.27
VPS28-215ENST00000531924 MYNNQ9NPC7 610 aa13.34□□□□□ -0.27
VPS28-215ENST00000531924 MED11Q9P086 117 aa13.34□□□□□ -0.27
VPS28-215ENST00000531924 C19orf53Q9UNZ5 99 aaPredicted RBP13.34□□□□□ -0.27
VPS28-215ENST00000531924 FREM3P0C091 2139 aa13.34□□□□□ -0.27
VPS28-215ENST00000531924 A0A1W2PNV4 684 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 A8MXE2 369 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 LINC01387J3KSC0 135 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 UBFD1O14562 309 aaKnown RBP13.33□□□□□ -0.28
VPS28-215ENST00000531924 MSTNO14793 375 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 SEC14L5O43304 696 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 SEC22BO75396 215 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 RSL1D1O76021 490 aaKnown RBP13.33□□□□□ -0.28
VPS28-215ENST00000531924 TGM6O95932 706 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 CRHP06850 196 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 KCNJ5P48544 419 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 GAS1P54826 345 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 FOXA1P55317 472 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 PSG6Q00889 435 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 FOXD4Q12950 439 aaPredicted RBP13.33□□□□□ -0.28
VPS28-215ENST00000531924 DEFB113Q30KQ7 82 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 CCDC153Q494R4 210 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 FAM71E1Q6IPT2 247 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 NOXRED1Q6NXP6 359 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 IKBIPQ70UQ0 350 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 TRIM46Q7Z4K8 759 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 ADGRE4PQ86SQ3 457 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 OR2M3Q8NG83 312 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 DUSP19Q8WTR2 217 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 C11orf24Q96F05 449 aaPredicted RBP13.33□□□□□ -0.28
VPS28-215ENST00000531924 AMDHD1Q96NU7 426 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 SLC39A3Q9BRY0 314 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 G6PC3Q9BUM1 346 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 FAM120CQ9NX05 1096 aaKnown RBP13.33□□□□□ -0.28
VPS28-215ENST00000531924 TAS2R7Q9NYW3 318 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 STOML1Q9UBI4 398 aa13.33□□□□□ -0.28
VPS28-215ENST00000531924 AKAP6Q13023 2319 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 A0A1W2PPM1 405 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 TTC36A6NLP5 189 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 G3V2L1 256 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 H3BML4 177 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 UPK1AO00322 258 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 SLC28A1O00337 649 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 RGS14O43566 566 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 KCNH1O95259 989 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 ATE1O95260 518 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 IL33O95760 270 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 FAM153BP0C7A2 387 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 UROSP10746 265 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 CPA3P15088 417 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 GABRA3P34903 492 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 RPS3AP61247 264 aaKnown RBP13.32□□□□□ -0.28
VPS28-215ENST00000531924 FAM153CQ494X1 144 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 VPS26BQ4G0F5 336 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 PPP4R4Q6NUP7 873 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 FRMD7Q6ZUT3 714 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 SZRD1Q7Z422 152 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 OR2L13Q8N349 312 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 FADS6Q8N9I5 356 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 GPR151Q8TDV0 419 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 UBLCP1Q8WVY7 318 aaPredicted RBP13.32□□□□□ -0.28
VPS28-215ENST00000531924 SMPDL3BQ92485 455 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 ELP4Q96EB1 424 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 PGM2Q96G03 612 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 PIGQQ9BRB3 760 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 GLIPR2Q9H4G4 154 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 PLEKHF2Q9H8W4 249 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 EQTNQ9NQ60 294 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 ZNF226Q9NYT6 803 aa13.32□□□□□ -0.28
VPS28-215ENST00000531924 EXPH5Q8NEV8 1989 aa13.31□□□□□ -0.28
VPS28-215ENST00000531924 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms