RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ZBTB18	Q99592	522 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	PRRT1	Q99946	306 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	COPS4	Q9BT78	406 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	TMEM121	Q9BTD3	319 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	DCUN1D5	Q9BTE7	237 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	POTEKP	Q9BYX7	375 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	TM6SF2	Q9BZW4	377 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	UCK2	Q9BZX2	261 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	NXF2	Q9GZY0	626 aa	Known RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	ILKAP	Q9H0C8	392 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	ASB7	Q9H672	318 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	KIR3DX1	Q9H7L2	352 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	NOL11	Q9H8H0	719 aa	Known RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	RNF122	Q9H9V4	155 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	MID1IP1	Q9NPA3	183 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	NIT2	Q9NQR4	276 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	TREX1	Q9NSU2	369 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	MED11	Q9P086	117 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	WARS2	Q9UGM6	360 aa	Known RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	RWDD2A	Q9UIY3	292 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	ANAPC7	Q9UJX3	599 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SLC13A4	Q9UKG4	626 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	FZD10	Q9ULW2	581 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	RNF11	Q9Y3C5	154 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	DISP3	Q9P2K9	1392 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	PARP4	Q9UKK3	1724 aa	Known RBP	5.25	□□□□□ -1.57
CD44-231	ENST00000531110	SAMD9L	Q8IVG5	1584 aa		5.25	□□□□□ -1.57
CD44-231	ENST00000531110	NFASC	O94856	1347 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	CPS1	P31327	1500 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	CACNA1F	O60840	1977 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	LY6G6E	A0A0G2JKS1	128 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	RPS10-NUDT3	A0A1W2PQS6	291 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	hCG_1807616	A0A1W2PRN6	198 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	OR2AT4	A6NND4	320 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	LRRN3	E7EW58	273 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	DNASE2	O00115	360 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	SOCS2	O14508	198 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	IRAK2	O43187	625 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	KCNAB3	O43448	404 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	SELENOF	O60613	162 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	GGCT	O75223	188 aa	Known RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	EIF3G	O75821	320 aa	Known RBP eCLIP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	GLCE	O94923	617 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	GABARAP	O95166	117 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	LGI1	O95970	557 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ADA	P00813	363 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	CALCA	P01258	141 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	NR3C1	P04150	777 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	TK1	P04183	234 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	GPI	P06744	558 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ADRB2	P07550	413 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	METTL15P1	P0C7V9	234 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	DHRS4L1	P0CG22	281 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	SLC35E2B	P0CK96	405 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	SLC35E2	P0CK97	266 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	MYL2	P10916	166 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF182	P17025	639 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	HOXB9	P17482	250 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	CCNO	P22674	350 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	LHCGR	P22888	699 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	DTYMK	P23919	212 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	CPOX	P36551	454 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	CDH15	P55291	814 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	NME5	P56597	212 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	SELENOV	P59797	346 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	RAP1A	P62834	184 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	IFI35	P80217	286 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF155	Q12901	538 aa	Predicted RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ECH1	Q13011	328 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	GRB7	Q14451	532 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	PGM5	Q15124	567 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	RBMS2	Q15434	407 aa	Known RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF239	Q16600	458 aa	Known RBP	5.24	□□□□□ -1.57
CD44-231	ENST00000531110	NDUFAF6	Q330K2	333 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110		Q5BKY6	102 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	RABGAP1L	Q5R372	815 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	FAM69A	Q5T7M9	428 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ANKRD22	Q5VYY1	191 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	MED27	Q6P2C8	311 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF773	Q6PK81	442 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	SHC4	Q6S5L8	630 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF793	Q6ZN11	406 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ARC	Q7LC44	396 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	MDGA2	Q7Z553	956 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	COMMD7	Q86VX2	200 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	UNC5CL	Q8IV45	518 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	STK40	Q8N2I9	435 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	FBXW8	Q8N3Y1	598 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	DNAJC22	Q8N4W6	341 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	TMEM199	Q8N511	208 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	POMGNT2	Q8NAT1	580 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	POGLUT1	Q8NBL1	392 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	CCDC54	Q8NEL0	328 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	C17orf47	Q8NEP4	570 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	GPRC5A	Q8NFJ5	357 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	OR52M1	Q8NGK5	317 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	OR6M1	Q8NGM8	313 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	WDR20	Q8TBZ3	569 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	CLEC4C	Q8WTT0	213 aa		5.24	□□□□□ -1.57
CD44-231	ENST00000531110	ING5	Q8WYH8	240 aa		5.24	□□□□□ -1.57

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