RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 REPS1Q96D71 796 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 MBD6Q96DN6 1003 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 EGLN2Q96KS0 407 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 HS6ST2Q96MM7 605 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 BBC3Q96PG8 261 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 TRIB1Q96RU8 372 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 CDRT15Q96T59 188 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 MACROD1Q9BQ69 325 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 AIF1LQ9BQI0 150 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 DPH7Q9BTV6 452 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 TBCDQ9BTW9 1192 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 SLC25A23Q9BV35 468 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 DPY30Q9C005 99 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 AICDAQ9GZX7 198 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PCBD2Q9H0N5 130 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 WNT5BQ9H1J7 359 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PCED1AQ9H1Q7 454 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 MMADHCQ9H3L0 296 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 SRMSQ9H3Y6 488 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 DENND2DQ9H6A0 471 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 CXorf36Q9H7Y0 433 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 SYNPO2LQ9H987 977 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 UNKLQ9H9P5 680 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 WDR41Q9HAD4 459 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 EFCAB1Q9HAE3 211 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 BRF2Q9HAW0 419 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PDE7BQ9NP56 450 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 MRPS30Q9NP92 439 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 SLC52A3Q9NQ40 469 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PRMT8Q9NR22 394 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 ACTR3BQ9P1U1 418 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 VPS29Q9UBQ0 182 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 EIF3LQ9Y262 564 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 NDUFAF1Q9Y375 327 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 IGSF10Q6WRI0 2623 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 ZNF407Q9C0G0 2248 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 GTF3C1Q12789 2109 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 KIR2DS5A0A0G2JLQ3 304 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 A0A0G2JNG1 304 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 GNG14A0A1W2PPG7 69 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 TRBC2A0A5B9 178 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 OR6C74A6NCV1 312 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 ANKDD1BA6NHY2 528 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 OR6C65A6NJZ3 312 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 BBIP1A8MTZ0 92 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 C4orf51C9J302 202 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 NPIPB8E9PQR5 432 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 KIR2DS3K7RE56 304 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 FXYD1O00168 92 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 VILLO15195 856 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 PPM1DO15297 605 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 YY2O15391 372 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 NDUFS4O43181 175 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 KLK10O43240 276 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 AQP9O43315 295 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 PCDH7O60245 1069 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 MGRN1O60291 552 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 NOBOXO60393 691 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 PRAMEF10O60809 474 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 CBFA2T3O75081 653 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 EEDO75530 441 aaKnown RBP3.91□□□□□ -1.78
CD44-226ENST00000527889 CIB2O75838 187 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 MYO1DO94832 1006 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 CCNDBP1O95273 360 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 CER1O95813 267 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 TBX6O95947 436 aaPredicted RBP3.91□□□□□ -1.78
CD44-226ENST00000527889 PLGP00747 810 aaPredicted RBP3.91□□□□□ -1.78
CD44-226ENST00000527889 LMNAP02545 664 aaKnown RBP3.91□□□□□ -1.78
CD44-226ENST00000527889 CSF2P04141 144 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 KLK1P06870 262 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 ANXA4P09525 319 aaPredicted RBP3.91□□□□□ -1.78
CD44-226ENST00000527889 PRPS2P11908 318 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 PVRP15151 417 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 XRCC1P18887 633 aaPredicted RBP3.91□□□□□ -1.78
CD44-226ENST00000527889 MAGP20916 626 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 GCSHP23434 173 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 JAK1P23458 1154 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 CMPK1P30085 196 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 TIA1P31483 386 aaKnown RBP eCLIP3.91□□□□□ -1.78
CD44-226ENST00000527889 HNRNPH1P31943 449 aaKnown RBP3.91□□□□□ -1.78
CD44-226ENST00000527889 S100A3P33764 101 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 PTGS2P35354 604 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 IDUAP35475 653 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 GRIA3P42263 894 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 ACADVLP49748 655 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 RAP1GDS1P52306 607 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 SLC7A2P52569 658 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 ATXN3P54252 364 aaPredicted RBP3.91□□□□□ -1.78
CD44-226ENST00000527889 CLDN8P56748 225 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 C21orf59P57076 290 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 HTD2P86397 168 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 BNC1Q01954 994 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 HHEXQ03014 270 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 NOTCH2Q04721 2471 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 PIGFQ07326 219 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 STX5Q13190 355 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 CEACAM7Q14002 265 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 ITPR1Q14643 2758 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 KIR2DS5Q14953 304 aa3.91□□□□□ -1.78
CD44-226ENST00000527889 KPNB1Q14974 876 aaKnown RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms