RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 HIVEP1P15822 2718 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 EML6Q6ZMW3 1958 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 PRSS51A0A1B0GVH4 220 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 FAM166BA8MTA8 275 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 TP53I11O14683 189 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 TO15178 435 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 PDE9AO76083 593 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 PSMG1O95456 288 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 IL6P05231 212 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 PGRP06401 933 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 ABCB1P08183 1280 aaPredicted RBP9.3□□□□□ -0.92
VPS28-204ENST00000526054 KRT16P08779 473 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 FBXO45P0C2W1 286 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 DRD5P21918 477 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 CHRNB4P30926 498 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 PRIM2P49643 509 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 ATP4BP51164 291 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 ARFIP2P53365 341 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 PRKAG1P54619 331 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 WNT3P56703 355 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 RPP38P78345 283 aaKnown RBP9.3□□□□□ -0.92
VPS28-204ENST00000526054 PLGLB1Q02325 96 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 PLCXD2Q0VAA5 305 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 SQLEQ14534 574 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 VPS26BQ4G0F5 336 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 TMEM211Q6ICI0 200 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 BHLHB9Q6PI77 547 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 CDRT4Q8N9R6 151 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 ACBD4Q8NC06 268 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 OR52N2Q8NGI0 321 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 OR4A15Q8NGL6 344 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 PSMA8Q8TAA3 256 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 NUDT8Q8WV74 236 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 RND1Q92730 232 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 FAM120BQ96EK7 910 aaKnown RBP9.3□□□□□ -0.92
VPS28-204ENST00000526054 TEX37Q96LM6 180 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 TREX2Q9BQ50 279 aaPredicted RBP9.3□□□□□ -0.92
VPS28-204ENST00000526054 TMEM120AQ9BXJ8 343 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 RABEP2Q9H5N1 569 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 Q9N2J8 555 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 EQTNQ9NQ60 294 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 PLSCR2Q9NRY7 297 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 SIRT3Q9NTG7 399 aaPredicted RBP9.3□□□□□ -0.92
VPS28-204ENST00000526054 DEPPQ9NTK1 212 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 MRGBPQ9NV56 204 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 NTMQ9P121 344 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 KLHL14Q9P2G3 628 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 RNF6Q9Y252 685 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 GPR55Q9Y2T6 319 aaPredicted RBP9.3□□□□□ -0.92
VPS28-204ENST00000526054 OR10H1Q9Y4A9 318 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 NPFFR2Q9Y5X5 522 aa9.3□□□□□ -0.92
VPS28-204ENST00000526054 PHF3Q92576 2039 aaKnown RBP9.3□□□□□ -0.92
VPS28-204ENST00000526054 SETD2Q9BYW2 2564 aaPredicted RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 FAM234BA2RU67 622 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 PINLYPA6NC86 204 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 NKX2-6A6NCS4 301 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 C9JVG2 144 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 ZNF354AO60765 605 aaPredicted RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 PPM1BO75688 479 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 CPSF4O95639 269 aaKnown RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 P04436 131 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 NAGAP17050 411 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 ABCD3P28288 659 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 IL12AP29459 219 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 KRT20P35900 424 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 CCT3P49368 545 aaKnown RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 POLR2JP52435 117 aaKnown RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 DGKQP52824 942 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 SEC24CP53992 1094 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 CORO7P57737 925 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 HBA1P69905 142 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 MRPS22P82650 360 aaKnown RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 GABPB1Q06547 395 aaPredicted RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 TP53BP2Q13625 1128 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 NTRK2Q16620 822 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 ZNF791Q3KP31 576 aaPredicted RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 METTL21CQ5VZV1 264 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 ZCCHC12Q6PEW1 402 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 PAOXQ6QHF9 649 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 LYPD8Q6UX82 237 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 GK5Q6ZS86 529 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 MSANTD1Q6ZTZ1 278 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 CPLX4Q7Z7G2 160 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 SLC22A16Q86VW1 577 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 ANKRD46Q86W74 232 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 SLC44A2Q8IWA5 706 aaPredicted RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 PRR22Q8IZ63 422 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 CLECL1Q8IZS7 167 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 RPRMLQ8N4K4 120 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 FAM13CQ8NE31 585 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 OR2M7Q8NG81 312 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 OR5M3Q8NGP4 307 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 OR9I1Q8NGQ6 314 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 JADE3Q92613 823 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 OMA1Q96E52 524 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 CCDC115Q96NT0 180 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 ZNF317Q96PQ6 595 aaPredicted RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 OR52E6Q96RD3 313 aa9.29□□□□□ -0.92
VPS28-204ENST00000526054 LMF2Q9BU23 707 aaKnown RBP9.29□□□□□ -0.92
VPS28-204ENST00000526054 TTTY12Q9BZ98 90 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms