RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 ZNF613Q6PF04 617 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 TMEM184AQ6ZMB5 413 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 CDHR3Q6ZTQ4 885 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 Q6ZVQ6 151 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 PIWIL3Q7Z3Z3 882 aaKnown RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 MYPOPQ86VE0 399 aaPredicted RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 AQP12AQ8IXF9 295 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 GPR65Q8IYL9 337 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 CCDC170Q8IYT3 715 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 SLC43A2Q8N370 569 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 LRRC52Q8N7C0 313 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 TMEM99Q8N816 258 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 Q8NBF4 154 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 OR10T2Q8NGX3 314 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 GTF3AQ92664 365 aaKnown RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 ULK4Q96C45 1275 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 EEF2KMTQ96G04 330 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 DHTKD1Q96HY7 919 aaPredicted RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 ANKRD36BP1Q96IX9 119 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 SLC45A3Q96JT2 553 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 SENP8Q96LD8 212 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 MYCBPQ99417 103 aaPredicted RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 GPATCH1Q9BRR8 931 aaKnown RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 SP140LQ9H930 580 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.23□□□□□ -1.89
CD44-219ENST00000525685 TRPC4Q9UBN4 977 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 SH3GLB1Q9Y371 365 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 C2orf16Q68DN1 1984 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 FAM149AA5PLN7 773 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 VGLL3A8MV65 326 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 K7EQD1 137 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 CYB561D2O14569 222 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 TTI1O43156 1089 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 MLNRO43193 412 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 SLC7A4O43246 635 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 MBTPS2O43462 519 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 LRCH4O75427 683 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 GLCEO94923 617 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 SLC16A8O95907 504 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 CALCAP01258 141 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 HLA-DRAP01903 254 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 KRT3P12035 628 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 SKILP12757 684 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 KRT13P13646 458 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 OR1D2P34982 312 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 MAGEB1P43366 347 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 GCLMP48507 274 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 CD151P48509 253 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 AP3M2P53677 418 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 ARPP19P56211 112 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 MYL6P60660 151 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 FKBP3Q00688 224 aaKnown RBP3.22□□□□□ -1.89
CD44-219ENST00000525685 KIAA0141Q14154 515 aaPredicted RBP3.22□□□□□ -1.89
CD44-219ENST00000525685 ZNF699Q32M78 642 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 CCDC40Q4G0X9 1142 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 IFI44LQ53G44 452 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 SPANXN4Q5MJ08 99 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 CCDC183Q5T5S1 534 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 LIN9Q5TKA1 542 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 WSCD1Q658N2 575 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 SPOPLQ6IQ16 392 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 SLC8B1Q6J4K2 584 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 TMEM64Q6YI46 380 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 SIGLEC15Q6ZMC9 328 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 GDPGP1Q6ZNW5 385 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 KCTD9Q7L273 389 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 ZFAND4Q86XD8 727 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 OR4N5Q8IXE1 308 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 KLHDC8AQ8IYD2 350 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 PDCL2Q8N4E4 241 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 CARNMT1Q8N4J0 409 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 CSGALNACT2Q8N6G5 542 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 C10orf53Q8N6V4 93 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 MLKLQ8NB16 471 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 OR5M9Q8NGP3 310 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 GANCQ8TET4 914 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 NPRL2Q8WTW4 380 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 SMPDL3AQ92484 453 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 SLC35C1Q96A29 364 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 ZNF707Q96C28 371 aaPredicted RBP3.22□□□□□ -1.89
CD44-219ENST00000525685 HPDLQ96IR7 371 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 MRPL45Q9BRJ2 306 aaKnown RBP3.22□□□□□ -1.89
CD44-219ENST00000525685 OVOL2Q9BRP0 275 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 FUT8Q9BYC5 575 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 DPEP3Q9H4B8 488 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 SMYD3Q9H7B4 428 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 VIPAS39Q9H9C1 493 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 AKIRIN1Q9H9L7 192 aaPredicted RBP3.22□□□□□ -1.89
CD44-219ENST00000525685 GDAP2Q9NXN4 497 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 ASIC3Q9UHC3 531 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 RWDD2AQ9UIY3 292 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 CEP290O15078 2479 aa3.22□□□□□ -1.89
CD44-219ENST00000525685 MTCL1Q9Y4B5 1905 aaKnown RBP3.21□□□□□ -1.9
CD44-219ENST00000525685 CHD9Q3L8U1 2897 aa3.21□□□□□ -1.9
CD44-219ENST00000525685 MEX3AA1L020 520 aaKnown RBP3.21□□□□□ -1.9
CD44-219ENST00000525685 SYCE3A1L190 88 aa3.21□□□□□ -1.9
CD44-219ENST00000525685 LRRD1A4D1F6 860 aa3.21□□□□□ -1.9
CD44-219ENST00000525685 CCL16O15467 120 aa3.21□□□□□ -1.9
CD44-219ENST00000525685 STX10O60499 249 aa3.21□□□□□ -1.9
CD44-219ENST00000525685 HUS1O60921 280 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms