RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 PRRG4Q9BZD6 226 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 RTN4RQ9BZR6 473 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 PFDN4Q9NQP4 134 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 FLRT3Q9NZU0 649 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 CPSF2Q9P2I0 782 aaKnown RBP18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 ACOT9Q9Y305 439 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 ZNF780BQ9Y6R6 833 aa18.2■□□□□ 0.5
SQSTM1-215ENST00000514093 SHISA8B8ZZ34 492 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 HAX1O00165 279 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 GUCY1B2O75343 617 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 PLGP00747 810 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 DANCRP0C864 163 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 CTAGE8P0CG41 777 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 FAM157CP0CG43 387 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 CRABP2P29373 138 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 EVI2BP34910 448 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 PNLIPRP2P54317 469 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 ZNF844Q08AG5 666 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 FAPQ12884 760 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 ZNF628Q5EBL2 1059 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 FAM219BQ5XKK7 198 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 C3orf62Q6ZUJ4 267 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 SLC44A2Q8IWA5 706 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 CTAGE4Q8IX94 777 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 METTL25Q8N6Q8 603 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 PPM1NQ8N819 430 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 RHEBL1Q8TAI7 183 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 TRPC4APQ8TEL6 797 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 SMAP2Q8WU79 429 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 GFM2Q969S9 779 aaKnown RBP18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 FBXW5Q969U6 566 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 VSTM2LQ96N03 204 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 NTMT1Q9BV86 223 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 FOLH1BQ9HBA9 442 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 GDF2Q9UK05 429 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 PSME2Q9UL46 239 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 SLC12A4Q9UP95 1085 aa18.19■□□□□ 0.5
SQSTM1-215ENST00000514093 PCNX3Q9H6A9 2034 aa18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 GMFGO60234 142 aa18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 EIF1AXP47813 144 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 CTBP2P56545 445 aa18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 MRPS25P82663 173 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 SRSF2Q01130 221 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 ADAM5Q6NVV9 412 aa18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 OR9A2Q8NGT5 310 aa18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 UHMK1Q8TAS1 419 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 FARSBQ9NSD9 589 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 UTS2RQ9UKP6 389 aa18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 RNF115Q9Y4L5 304 aa18.18■□□□□ 0.5
SQSTM1-215ENST00000514093 ANK2Q01484 3957 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 ALDOAP04075 364 aaKnown RBP18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 FCGR2AP12318 317 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 CCNG1P51959 295 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 GALNT1Q10472 559 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 IFT88Q13099 833 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 TSC22D1Q15714 1073 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 LGSNQ5TDP6 509 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 DNM1P46Q6ZS02 220 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 ATG4DQ86TL0 474 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 GGNQ86UU5 652 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 DUSP19Q8WTR2 217 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 S100PBPQ96BU1 408 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 C1GALT1C1Q96EU7 318 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 TACO1Q9BSH4 297 aaKnown RBP18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 C12orf49Q9H741 205 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 ZBTB26Q9HCK0 441 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 GPR52Q9Y2T5 361 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 OR10H1Q9Y4A9 318 aa18.17■□□□□ 0.5
SQSTM1-215ENST00000514093 LINC01387J3KSC0 135 aa18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 EIF1AYO14602 144 aaKnown RBP18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 FADS1O60427 444 aa18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 BCAS2O75934 225 aaPredicted RBP18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 OPN1LWP04000 364 aa18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 SH2D4BQ5SQS7 431 aa18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 C6orf52Q5T4I8 152 aa18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 BEND4Q6ZU67 534 aa18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 ZNF619Q8N2I2 560 aa18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 ZNF675Q8TD23 568 aa18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 GMPPAQ96IJ6 420 aaPredicted RBP18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 NSUN5Q96P11 429 aaKnown RBP18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 PTGES2Q9H7Z7 377 aa18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 TNPO3Q9Y5L0 923 aaKnown RBP18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 AP4B1Q9Y6B7 739 aa18.16■□□□□ 0.5
SQSTM1-215ENST00000514093 A0A1W2PP18 115 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 SS18L1O75177 396 aaPredicted RBP18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 NTN1O95631 604 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 ESRRBO95718 433 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 C2P06681 752 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 CD3EP07766 207 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 IL11P20809 199 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 MRPS22P82650 360 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 GANABQ14697 944 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 ACAP2Q15057 778 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 FAM83EQ2M2I3 478 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 ERCC6LQ2NKX8 1250 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 PGGHGQ32M88 737 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 NCMAPQ5T1S8 102 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 CYS1Q717R9 158 aa18.15■□□□□ 0.5
SQSTM1-215ENST00000514093 MARCH3Q86UD3 253 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms