RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SOX30O94993 753 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 CRYZL1O95825 349 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 RENP00797 406 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 CD2P06729 351 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 CERS1P27544 350 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 KCNJ5P48544 419 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 PRMT2P55345 433 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 SIM1P81133 766 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 TEKQ02763 1124 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 OLFML2AQ68BL7 652 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 PGBD2Q6P3X8 592 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 RBM45Q8IUH3 476 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 DNAJC5GQ8N7S2 189 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 ACOT11Q8WXI4 607 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 HERVK_113Q902F9 699 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 SPACA7Q96KW9 195 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 NEDD4LQ96PU5 975 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 MCCC1Q96RQ3 725 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 ACSS1Q9NUB1 689 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 LOC105369274A0A096LPK9 316 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 PCP4L1A6NKN8 68 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 ZAR1LA6NP61 321 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 GRXCR1A8MXD5 290 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 POLR1CO15160 346 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 RFPL3O75679 317 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 ETHE1O95571 254 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 ECDO95905 644 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 PIPP12273 146 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 AHCYP23526 432 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 AHRP35869 848 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 ODF4Q2M2E3 257 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 FIGNL1Q6PIW4 674 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 RPTNQ6XPR3 784 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 FAM83HQ6ZRV2 1179 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 VRK2Q86Y07 508 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 OR4N4Q8N0Y3 316 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 NANOGP1Q8N7R0 232 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 SLC7A6Q92536 515 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 SLC35B4Q969S0 331 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 RELTQ969Z4 430 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 INIPQ9NRY2 104 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 HCN3Q9P1Z3 774 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 COPZ2Q9P299 210 aa7.93□□□□□ -1.14
LIMCH1-216ENST00000512820 CTSAP10619 480 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 PRPH2P23942 346 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 FCRLBQ6BAA4 426 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 ACOT4Q8N9L9 421 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 CYB561A3Q8NBI2 242 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 FBXO15Q8NCQ5 510 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 LINC01599Q8WXQ3 324 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 TBC1D20Q96BZ9 403 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 S100A13Q99584 98 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 A4GALTQ9NPC4 353 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 TMEM184CQ9NVA4 438 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 TBC1D24Q9ULP9 559 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 RASD1Q9Y272 281 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 MAU2Q9Y6X3 613 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 ANKRD34BA5PLL1 514 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 TRIM3O75382 744 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 SLC1A3P43003 542 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 RACK1P63244 317 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 ADAM8P78325 824 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 TSPAN31Q12999 210 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 ARHGAP19Q14CB8 494 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 PGGHGQ32M88 737 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 CCDC157Q569K6 752 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 C6orf132Q5T0Z8 1188 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 PAQR6Q6TCH4 344 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 BAIAP2L2Q6UXY1 529 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 ZNF627Q7L945 461 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 WDR53Q7Z5U6 358 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 NKD1Q969G9 470 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 TCEAL4Q96EI5 215 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 HS6ST2Q96MM7 605 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 HOXD1Q9GZZ0 328 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 QRSL1Q9H0R6 528 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 MVB12BQ9H7P6 319 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 TEX10Q9NXF1 929 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 BABAM2Q9NXR7 383 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 MGAT4CQ9UBM8 478 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 GPR34Q9UPC5 381 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 OR14I1A6ND48 311 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 CLEC3AO75596 197 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 POLR2CP19387 275 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 MAP3K8P41279 467 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 CRYZQ08257 329 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 METAP1DQ6UB28 335 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 OLIG3Q7RTU3 272 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 PEG10Q86TG7 708 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 NLRP8Q86W28 1048 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 OR2T35Q8NGX2 323 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 SLC7A13Q8TCU3 470 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 TM4SF18Q96CE8 201 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 C7orf34Q96L11 122 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 FYTTD1Q96QD9 318 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 GAL3ST4Q96RP7 486 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 OR10A4Q9H209 315 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 OR51J1Q9H342 316 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 Q9N2J8 555 aa7.92□□□□□ -1.14
LIMCH1-216ENST00000512820 A0A1W2PP55 124 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms