RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 GRPEL2Q8TAA5 225 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 SUN3Q8TAQ9 357 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 SAMD8Q96LT4 415 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 TMEM43Q9BTV4 400 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 FAIM2Q9BWQ8 316 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC38A1Q9H2H9 487 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 C6orf106Q9H6K1 298 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 PELI2Q9HAT8 420 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 WASH6PQ9NQA3 447 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 KCNK6Q9Y257 313 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 IGKV1-8A0A0C4DH67 115 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 VEGFDO43915 354 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 ARSBP15848 533 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 IFNGR2P38484 337 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 WASP42768 502 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 AADACL4Q5VUY2 407 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 PLEKHM3Q6ZWE6 761 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 TIGD4Q8IY51 512 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 KLHL36Q8N4N3 616 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 OR9A2Q8NGT5 310 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 PIGXQ8TBF5 258 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 ZFAND1Q8TCF1 268 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 SMAP2Q8WU79 429 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 OR7D2Q96RA2 312 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 MCHR1Q99705 422 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 HINT3Q9NQE9 182 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 ING3Q9NXR8 418 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 TNFRSF10DQ9UBN6 386 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 TEKT2Q9UIF3 430 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 SIRT4Q9Y6E7 314 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 OR52A4PA6NMU1 304 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 AKAP8O43823 692 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 PCDH8O95206 1070 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 ITGB8P26012 769 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 OMPP47874 163 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 AGFG1P52594 562 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 ABATP80404 500 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 ST3GAL3Q11203 375 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 TMEM91Q6ZNR0 172 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 C16orf62Q7Z3J2 963 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 NR2C2APQ86WQ0 139 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 LINC00471Q8N535 108 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 ACOT4Q8N9L9 421 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 ZNF485Q8NCK3 441 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 TMEM255BQ8WV15 326 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 KIAA1143Q96AT1 154 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 BCL2L10Q9HD36 194 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 MRPS18AQ9NVS2 196 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 TAS2R7Q9NYW3 318 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 MAFFQ9ULX9 164 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 ENTPD4Q9Y227 616 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 PLEKHM1Q9Y4G2 1056 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 PCDHGB7Q9Y5F8 929 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 A0A0A6YYD5 115 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 OTOL1A6NHN0 477 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 ZNF780AO75290 641 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 DSG2Q14126 1118 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 KLHL12Q53G59 568 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 KIAA1211LQ6NV74 962 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 PLBD1Q6P4A8 553 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 CD200R1LQ6Q8B3 271 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 RASSF6Q6ZTQ3 369 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 KRT74Q7RTS7 529 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 NUP43Q8NFH3 380 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 TRIM63Q969Q1 353 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 PHF21AQ96BD5 680 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 CAPNS2Q96L46 248 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 LIPT1Q9Y234 373 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 CHST2Q9Y4C5 530 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 SCN3AQ9NY46 2000 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 TRAV6A0A075B6T7 132 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 A0A0G2JPF8 293 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 ABHD14A-ACY1A0A1B0GW23 586 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 C12orf71A8MTZ7 269 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 KDM4EB2RXH2 506 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 HNRNPCL2B2RXH8 293 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 HNRNPCL3B7ZW38 293 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 TNFRSF10AO00220 468 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 MEN1O00255 615 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 CDC42EP2O14613 210 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 ORC5O43913 435 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 REM1O75628 298 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 HNRNPCL4P0DMR1 293 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 EPCAMP16422 314 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 CERS1P27544 350 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 SHC1P29353 583 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 BCL6P41182 706 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 PRDX1Q06830 199 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 CAMK1Q14012 370 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 HNRNPA1L2Q32P51 320 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 C6orf132Q5T0Z8 1188 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 FAM205BPQ63HN1 556 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 METRNLQ641Q3 311 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 ARL9Q6T311 187 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 ARIH2OSQ8N7S6 290 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 OR2A1Q8NGT9 310 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 DIO2Q92813 273 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 RFKQ969G6 155 aa8.66□□□□□ -1.02
LIMCH1-215ENST00000512632 INSM2Q96T92 566 aaPredicted RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms