RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	ZNF764	Q96H86	408 aa	Predicted RBP	12.1	□□□□□ -0.47
RNF4-215	ENST00000511843	YIPF4	Q9BSR8	244 aa		12.1	□□□□□ -0.47
RNF4-215	ENST00000511843	UGT2B28	Q9BY64	529 aa		12.1	□□□□□ -0.47
RNF4-215	ENST00000511843		Q9N2J8	555 aa		12.1	□□□□□ -0.47
RNF4-215	ENST00000511843	CHST11	Q9NPF2	352 aa		12.1	□□□□□ -0.47
RNF4-215	ENST00000511843	NPDC1	Q9NQX5	325 aa	Predicted RBP	12.1	□□□□□ -0.47
RNF4-215	ENST00000511843	ATP6V1H	Q9UI12	483 aa		12.1	□□□□□ -0.47
RNF4-215	ENST00000511843	CBLC	Q9ULV8	474 aa		12.1	□□□□□ -0.47
RNF4-215	ENST00000511843	CAMK2A	Q9UQM7	478 aa		12.1	□□□□□ -0.47
RNF4-215	ENST00000511843	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	TMEM114	B3SHH9	223 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	SLITRK5	O94991	958 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	ZWINT	O95229	277 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	ACP2	P11117	423 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	G6PD	P11413	515 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	PRPS2	P11908	318 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	MAPK1	P28482	360 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	EVI2B	P34910	448 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	FRK	P42685	505 aa	Predicted RBP	12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	SLC1A6	P48664	564 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	GAS1	P54826	345 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	ZNHIT3	Q15649	155 aa	Predicted RBP	12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	CYP27C1	Q4G0S4	372 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	ACSF3	Q4G176	576 aa	Predicted RBP	12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	VASN	Q6EMK4	673 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	LRIG3	Q6UXM1	1119 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	ZAR1	Q86SH2	424 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	PLCZ1	Q86YW0	608 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	OR14L1P	Q8NHC6	308 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	LILRB4	Q8NHJ6	448 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	GPR151	Q8TDV0	419 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	ASB5	Q8WWX0	329 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	SLC9A6	Q92581	669 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	ABTB1	Q969K4	478 aa	Predicted RBP	12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	GIMAP5	Q96F15	307 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	C16orf58	Q96GQ5	468 aa		12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	LMF2	Q9BU23	707 aa	Known RBP	12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	SIRT3	Q9NTG7	399 aa	Predicted RBP	12.09	□□□□□ -0.47
RNF4-215	ENST00000511843	RPH3A	Q9Y2J0	694 aa	Predicted RBP	12.09	□□□□□ -0.47
RNF4-215	ENST00000511843		A0A1W2PRB8	838 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	GMFG	O60234	142 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	FADS1	O60427	444 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	CBR3	O75828	277 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	TOX	O94900	526 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	UTS2	O95399	124 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	TUBB	P07437	444 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	MYZAP	P0CAP1	466 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	GABRA1	P14867	456 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	STAR	P49675	285 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	WDR4	P57081	412 aa	Known RBP	12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	MRPS22	P82650	360 aa	Known RBP	12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	SRY	Q05066	204 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	TFF3	Q07654	80 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	DECR1	Q16698	335 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	BEND6	Q5SZJ8	279 aa	Predicted RBP	12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	HHAT	Q5VTY9	493 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	MFSD12	Q6NUT3	480 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	MEX3B	Q6ZN04	569 aa	Known RBP	12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	R3HCC1L	Q7Z5L2	792 aa	Known RBP	12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	MARCH3	Q86UD3	253 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	ZNF295-AS1	Q8N0V1	137 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	SLC16A11	Q8NCK7	471 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	NAXE	Q8NCW5	288 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	TNIP2	Q8NFZ5	429 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	RNF138	Q8WVD3	245 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	MTERF3	Q96E29	417 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	WDYHV1	Q96HA8	205 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	MS4A4E	Q96PG1	132 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	TRIM8	Q9BZR9	551 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	OR2B2	Q9GZK3	357 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	DSN1	Q9H410	356 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	AKTIP	Q9H8T0	292 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	ACSS1	Q9NUB1	689 aa	Predicted RBP	12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	ZCCHC3	Q9NUD5	404 aa	Known RBP	12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	PNPO	Q9NVS9	261 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	FBXO34	Q9NWN3	711 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	TAS2R10	Q9NYW0	307 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	MED11	Q9P086	117 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	PPP4R1L	Q9P1A2	415 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	DKKL1	Q9UK85	242 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	RAP2C	Q9Y3L5	183 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	SNX8	Q9Y5X2	465 aa		12.08	□□□□□ -0.48
RNF4-215	ENST00000511843	TMEM120B	A0PK00	339 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	EMC8	O43402	210 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	IL33	O95760	270 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	C6orf47	O95873	294 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	MAP3K8	P41279	467 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	RPL14	P50914	215 aa	Known RBP	12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	DIO3	P55073	304 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	MAGOH	P61326	146 aa	Known RBP	12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	NOTCH2	Q04721	2471 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	BST1	Q10588	318 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	STX3	Q13277	289 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	SNTB1	Q13884	538 aa	Known RBP	12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	DUSP5	Q16690	384 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	PGS1	Q32NB8	556 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	GRAMD1B	Q3KR37	738 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	CCNJ	Q5T5M9	372 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	CPTP	Q5TA50	214 aa		12.07	□□□□□ -0.48
RNF4-215	ENST00000511843	FIGNL1	Q6PIW4	674 aa		12.07	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms