RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 A0A1B0GVC2 190 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 RPL35P42766 123 aaKnown RBP12.44□□□□□ -0.42
PTPRF-215ENST00000496447 NFATC4Q14934 902 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 PRAMEF8Q5VWM4 474 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 PRAMEF7Q5VXH5 474 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 TMPRSS12Q86WS5 348 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF584Q8IVC4 421 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 MINDY1Q8N5J2 469 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 OR7G3Q8NG95 312 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 TANKQ92844 425 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 MAELQ96JY0 434 aaKnown RBP12.44□□□□□ -0.42
PTPRF-215ENST00000496447 OR5B2Q96R09 309 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 DMRT3Q9NQL9 472 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 H3BML4 177 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 MC3RP41968 323 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 ERVFC1P60507 584 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 MPP2Q14168 576 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 BCL2L15Q5TBC7 163 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 RAB11FIP2Q7L804 512 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 VWA5B2Q8N398 1253 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 TSNAXQ99598 290 aaKnown RBP12.44□□□□□ -0.42
PTPRF-215ENST00000496447 RBM24Q9BX46 236 aaKnown RBP12.44□□□□□ -0.42
PTPRF-215ENST00000496447 PPA2Q9H2U2 334 aa12.44□□□□□ -0.42
PTPRF-215ENST00000496447 SNAP29O95721 258 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 NR4A2P43354 598 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 CSNK1DP48730 415 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 C6orf141Q5SZD1 244 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 PPP1R3BQ86XI6 285 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 MUS81Q96NY9 551 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF442Q9H7R0 627 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 CCM2LQ9NUG4 571 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-215ENST00000496447 MT-ND2P03891 347 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 AFF1P51825 1210 aaKnown RBP12.43□□□□□ -0.42
PTPRF-215ENST00000496447 ZXDBP98169 803 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 CDKL4Q5MAI5 379 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 MFSD6LQ8IWD5 586 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 NRMQ8IXM6 262 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 OR5J2Q8NH18 312 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 SNIP1Q8TAD8 396 aaKnown RBP12.43□□□□□ -0.42
PTPRF-215ENST00000496447 TCEAL3Q969E4 200 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 MAGIXQ9H6Y5 334 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 ICKQ9UPZ9 632 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 NAALAD2Q9Y3Q0 740 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 HEMK1Q9Y5R4 338 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-215ENST00000496447 PDE4DIPQ5VU43 2346 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 M0R129 80 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 ACVR1BP36896 505 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 SLC6A8P48029 635 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 LRRN1Q6UXK5 716 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF709Q8N972 641 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 GALNT11Q8NCW6 608 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 COQ8AQ8NI60 647 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 TRMT10AQ8TBZ6 339 aaKnown RBP12.43□□□□□ -0.42
PTPRF-215ENST00000496447 NEIL2Q969S2 332 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 LGALS12Q96DT0 336 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 LRR1Q96L50 414 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 TIMM29Q9BSF4 260 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 FUNDC2Q9BWH2 189 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 ANKRD60Q9BZ19 345 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 VDAC3Q9Y277 283 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 KCNIP3Q9Y2W7 256 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 NAV1Q8NEY1 1877 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 MAN2A2P49641 1150 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 RHEBQ15382 184 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF789Q5FWF6 425 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 UBE2UQ5VVX9 321 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 NOXA1Q86UR1 476 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 MAL2Q969L2 176 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 HHIPL1Q96JK4 782 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 CA5BQ9Y2D0 317 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 ADAM18Q9Y3Q7 739 aa12.43□□□□□ -0.42
PTPRF-215ENST00000496447 UPK1BO75841 260 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 CSF2P04141 144 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF14P17017 642 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-215ENST00000496447 CTSCP53634 463 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 PIGGQ5H8A4 983 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 TANGO2Q6ICL3 276 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 FOLH1BQ9HBA9 442 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 CSNK1G1Q9HCP0 422 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 TAS2R3Q9NYW6 316 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 OR6C2Q9NZP2 312 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 TAAR2Q9P1P5 351 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 MCTS1Q9ULC4 181 aaKnown RBP12.42□□□□□ -0.42
PTPRF-215ENST00000496447 KIAA0355O15063 1070 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 APOC3P02656 99 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 GTF2F2P13984 249 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 HLA-FP30511 346 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 TDGQ13569 410 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 ARHGAP19Q14CB8 494 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 GRK1Q15835 563 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 C6orf132Q5T0Z8 1188 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF619Q8N2I2 560 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 DNTTIP1Q9H147 329 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 PPIL3Q9H2H8 161 aaKnown RBP12.42□□□□□ -0.42
PTPRF-215ENST00000496447 EXTL2Q9UBQ6 330 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 RFXAPO00287 272 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 EDN1P05305 212 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 RPS26P11Q5JNZ5 115 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-215ENST00000496447 TMEM201Q5SNT2 666 aa12.42□□□□□ -0.42
PTPRF-215ENST00000496447 LETMD1Q6P1Q0 360 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms