RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 C1DQ13901 141 aaKnown RBP15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 TMEFF1Q8IYR6 380 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 OR2L8Q8NGY9 312 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 ZCCHC10Q8TBK6 192 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 TSACCQ96A04 125 aaPredicted RBP15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 APOOQ9BUR5 198 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 MND1Q9BWT6 205 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 IRF2BPLQ9H1B7 796 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 B4DXG7 233 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 SLC2A10O95528 541 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 CELP19835 753 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 COL9A1P20849 921 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 CTBP2P56545 445 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 RPS21P63220 83 aaKnown RBP15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 GPLD1P80108 840 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 FABP5Q01469 135 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 CDK10Q15131 360 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 SYT14P1Q58G82 188 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 SLC30A6Q6NXT4 461 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 SLC25A19Q9HC21 320 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 TMEM74BQ9NUR3 256 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 PLEKHB1Q9UF11 243 aaPredicted RBP15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 CACNA1IQ9P0X4 2223 aa15.49■□□□□ 0.07
CCDC88B-210ENST00000494566 A8MVJ9 347 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 ZNF670-ZNF695F2Z2N8 137 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 FAAHO00519 579 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 PLA2G10O15496 165 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 TBX19O60806 448 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 ADH1BP00325 375 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 ASGR2P07307 311 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 FUT1P19526 365 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 HTR2BP41595 481 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 LBX1P52954 281 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 CHRNEQ04844 493 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 ILKQ13418 452 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 TMEM196Q5HYL7 178 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 ZNF57Q68EA5 555 aaPredicted RBP15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 KRT73Q86Y46 540 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 FRMD1Q8N878 549 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 YIPF7Q8N8F6 280 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 C9orf43Q8TAL5 461 aaPredicted RBP15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 RNFT2Q96EX2 444 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 FAIM2Q9BWQ8 316 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 MGAT4BQ9UQ53 548 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 PRKCAP17252 672 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 ID2Q02363 134 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 TJAP1Q5JTD0 557 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 C6orf132Q5T0Z8 1188 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 ZNF776Q68DI1 518 aaPredicted RBP15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 LAPTM4BQ86VI4 370 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 TIGD4Q8IY51 512 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 NANOGP1Q8N7R0 232 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 BBS1Q8NFJ9 593 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 FAM46AQ96IP4 442 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 C1QTNF2Q9BXJ5 285 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 ENTPD4Q9Y227 616 aa15.48■□□□□ 0.07
CCDC88B-210ENST00000494566 SHISA3A0PJX4 238 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 ZNF860A6NHJ4 632 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 PLOD3O60568 738 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 FCMRO60667 390 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 MYL12AP19105 171 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 KIR2DL1P43626 348 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 ADPRHP54922 357 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 GALK2Q01415 458 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 ZIC1Q15915 447 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 TATDN3Q17R31 274 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 SLX4IPQ5VYV7 408 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 PPP2R2DQ66LE6 453 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 CNIH2Q6PI25 160 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 SMARCD3Q6STE5 483 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 ENPP7Q6UWV6 458 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 SIX5Q8N196 739 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 SLC7A6Q92536 515 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 NT5DC2Q9H857 520 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 BEX1Q9HBH7 125 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 GALNT9Q9HCQ5 603 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 B3GAT2Q9NPZ5 323 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 SEC14L4Q9UDX3 406 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 POU2F2P09086 479 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 PEPDP12955 493 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 DRD2P14416 443 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 GPR4P46093 362 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 KHKP50053 298 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 KRR1Q13601 381 aaKnown RBP15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 ITPRIPL2Q3MIP1 535 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 SFTPA2Q8IWL1 248 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 Q8N402 240 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 FLCNQ8NFG4 579 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 OR7D2Q96RA2 312 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 CCDC32Q9BV29 185 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 KATNB1Q9BVA0 655 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 SLC22A4Q9H015 551 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 SLC17A4Q9Y2C5 497 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 RPL36Q9Y3U8 105 aaKnown RBP15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 A0A1W2PPK0 400 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 HYKKA2RU49 373 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 PRICKLE3O43900 615 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 SLC2A2P11168 524 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 INPP1P49441 399 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms