RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 DDX47Q9H0S4 455 aaKnown RBP12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 ALG2Q9H553 416 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 PTGES2Q9H7Z7 377 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 PAQR5Q9NXK6 330 aaPredicted RBP12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 AHSPQ9NZD4 102 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 TXNDC16Q9P2K2 825 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 PSME2Q9UL46 239 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 ABCG2Q9UNQ0 655 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 ACOT9Q9Y305 439 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 FREM1Q5H8C1 2179 aa12.73□□□□□ -0.37
PRPF40A-211ENST00000493468 PLCE1Q9P212 2302 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 IGHV4-30-2A0A087WSY4 118 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 CCDC189A1A4V9 331 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 ELOA3DA6NLF2 546 aaPredicted RBP12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 C17orf51A8MQB3 221 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 GOLGA6L6A8MZA4 724 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 CLOCKO15516 846 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 NDUFS7O75251 213 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 ERAL1O75616 437 aaKnown RBP12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 GP5P40197 560 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 SLC6A8P48029 635 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 PIK3CGP48736 1102 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 MAPK12P53778 367 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 CORO7P57737 925 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 MRPS35P82673 323 aaKnown RBP12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 DUSP2Q05923 314 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 DLG1Q12959 904 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 PDIA2Q13087 525 aaKnown RBP12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 LTB4RQ15722 352 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 SGCBQ16585 318 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 TMEM44Q2T9K0 475 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 CTU2Q2VPK5 515 aaKnown RBP12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 ELOA3BQ3SY89 546 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 ZNF628Q5EBL2 1059 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 CCNYL2Q5T2Q4 361 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 METTL2BQ6P1Q9 378 aaKnown RBP12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 METTL4Q8N3J2 472 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 ELOA3Q8NG57 546 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 RHEBL1Q8TAI7 183 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 CDKL2Q92772 493 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 S100PBPQ96BU1 408 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 KLHL29Q96CT2 875 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 C1GALT1C1Q96EU7 318 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 CNRIP1Q96F85 164 aaPredicted RBP12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 ZNF681Q96N22 645 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 NTMT1Q9BV86 223 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 SHARPINQ9H0F6 387 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 SDHAF3Q9NRP4 125 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 STOML1Q9UBI4 398 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 GDF2Q9UK05 429 aaPredicted RBP12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 RNF11Q9Y3C5 154 aa12.72□□□□□ -0.37
PRPF40A-211ENST00000493468 ALPK2Q86TB3 2170 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 CXorf49A8MYA2 514 aaPredicted RBP12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 FADS1O60427 444 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 PIAS1O75925 651 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 CD8AP01732 235 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 LTA4HP09960 611 aaKnown RBP12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 ADH6P28332 368 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 ALDH18A1P54886 795 aaKnown RBP12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 FAPQ12884 760 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 GTF2H2Q13888 395 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 GTF2H2CQ6P1K8 395 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 NPSR1Q6W5P4 371 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 TBC1D1Q86TI0 1168 aaPredicted RBP12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 NEUROG1Q92886 237 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 USB1Q9BQ65 265 aaKnown RBP12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 MRPL1Q9BYD6 325 aaKnown RBP12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 PRRG4Q9BZD6 226 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 TRIM2Q9C040 744 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 IPPKQ9H8X2 491 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 FAIMQ9NVQ4 179 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 MCTS1Q9ULC4 181 aaKnown RBP12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 ZNF780BQ9Y6R6 833 aa12.71□□□□□ -0.37
PRPF40A-211ENST00000493468 TP73O15350 636 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 SCO2O43819 266 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 SSX4O60224 188 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 GCM2O75603 506 aaPredicted RBP12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 SEC31AO94979 1220 aaKnown RBP12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 CLDN9O95484 217 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 SLC25A16P16260 332 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 ZNF17P17021 662 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 SRD5A1P18405 259 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 RUNX1T1Q06455 604 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 ERCC6LQ2NKX8 1250 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 FRG2Q64ET8 278 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 CLEC2AQ6UVW9 174 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 SEZ6L2Q6UXD5 910 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 CYS1Q717R9 158 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 COMMD6Q7Z4G1 85 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 GOLGA7Q7Z5G4 137 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 GABRG1Q8N1C3 465 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 KBTBD8Q8NFY9 601 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 OR52B6Q8NGF0 335 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 OR5M1Q8NGP8 315 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 HSD17B8Q92506 261 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 EFHD2Q96C19 240 aaPredicted RBP12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 ADGRG7Q96K78 797 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 FRG2BQ96QU4 278 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 OSBPL9Q96SU4 736 aa12.7□□□□□ -0.38
PRPF40A-211ENST00000493468 MED11Q9P086 117 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms