RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 BBS1Q8NFJ9 593 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 HERVK_113Q902F9 699 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 OTULINQ96BN8 352 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 MOAP1Q96BY2 351 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 TMED9Q9BVK6 235 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 PLA2G2FQ9BZM2 168 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 C11orf54Q9H0W9 315 aaPredicted RBP16.8■□□□□ 0.28
VIM-206ENST00000487938 RSPH9Q9H1X1 276 aaPredicted RBP16.8■□□□□ 0.28
VIM-206ENST00000487938 CLCA2Q9UQC9 943 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 EXOSC1Q9Y3B2 195 aaKnown RBP16.8■□□□□ 0.28
VIM-206ENST00000487938 REV3LO60673 3130 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 GPR89AB7ZAQ6 455 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 SYT5O00445 386 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 NCR1O76036 304 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 GPR89BP0CG08 455 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 SLC1A3P43003 542 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 RGS8P57771 180 aaPredicted RBP16.8■□□□□ 0.28
VIM-206ENST00000487938 DBPQ10586 325 aaPredicted RBP16.8■□□□□ 0.28
VIM-206ENST00000487938 CCDC92Q53HC0 331 aaPredicted RBP16.8■□□□□ 0.28
VIM-206ENST00000487938 TJAP1Q5JTD0 557 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 FAM111BQ6SJ93 734 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 B3GLCTQ6Y288 498 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 HSDL2Q6YN16 418 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 PLEKHM3Q6ZWE6 761 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 OR4N5Q8IXE1 308 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 NRMQ8IXM6 262 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 FAM181AQ8N9Y4 354 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 ADAMTS15Q8TE58 950 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 TMEM255BQ8WV15 326 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 GIMAP5Q96F15 307 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 PHOX2BQ99453 314 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 MCHR1Q99705 422 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 TIMM29Q9BSF4 260 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 RAB11FIP5Q9BXF6 653 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 SLC6A17Q9H1V8 727 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 LIPT1Q9Y234 373 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 GSTK1Q9Y2Q3 226 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 XIRP2A4UGR9 3374 aa16.8■□□□□ 0.28
VIM-206ENST00000487938 TRBV23OR9-2A0A075B6M9 112 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 CASKO14936 926 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 IDH3BO43837 385 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 SEC13P55735 322 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 GALNT6Q8NCL4 622 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 OR14C36Q8NHC7 312 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 ST6GAL2Q96JF0 529 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 ACTRT3Q9BYD9 372 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 CERS4Q9HA82 394 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 MALT1Q9UDY8 824 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 CSNK1G3Q9Y6M4 447 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 A0A1W2PQU0 124 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 IRGMA1A4Y4 181 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 SURF4O15260 269 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 POU2F2P09086 479 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 FCARP24071 287 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 CMPK1P30085 196 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 GABRA5P31644 462 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 ABATP80404 500 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 DUSP6Q16828 381 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 ZNF791Q3KP31 576 aaPredicted RBP16.79■□□□□ 0.28
VIM-206ENST00000487938 PRAMEF8Q5VWM4 474 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 PRAMEF7Q5VXH5 474 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 MTSS1LQ765P7 747 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 GDF7Q7Z4P5 450 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 MFSD9Q8NBP5 474 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 ATP6V1C2Q8NEY4 427 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 OR7G2Q8NG99 324 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 CDS1Q92903 461 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 MED18Q9BUE0 208 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 TMEM106CQ9BVX2 250 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 SLC22A4Q9H015 551 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 SNX7Q9UNH6 387 aa16.79■□□□□ 0.28
VIM-206ENST00000487938 A6NL46 340 aa16.78■□□□□ 0.28
VIM-206ENST00000487938 POLR1CO15160 346 aaPredicted RBP16.78■□□□□ 0.28
VIM-206ENST00000487938 ZNF888P0CJ79 500 aaPredicted RBP16.78■□□□□ 0.28
VIM-206ENST00000487938 CELP19835 753 aa16.78■□□□□ 0.28
VIM-206ENST00000487938 C5AR1P21730 350 aa16.78■□□□□ 0.28
VIM-206ENST00000487938 APEX1P27695 318 aaKnown RBP16.78■□□□□ 0.28
VIM-206ENST00000487938 IFNA8P32881 189 aa16.78■□□□□ 0.28
VIM-206ENST00000487938 RNF144AP50876 292 aaPredicted RBP16.78■□□□□ 0.28
VIM-206ENST00000487938 TBRG1Q3YBR2 411 aa16.78■□□□□ 0.28
VIM-206ENST00000487938 ZNF485Q8NCK3 441 aa16.78■□□□□ 0.28
VIM-206ENST00000487938 SLC41A3Q96GZ6 507 aa16.78■□□□□ 0.28
VIM-206ENST00000487938 SLC17A9Q9BYT1 436 aa16.78■□□□□ 0.28
VIM-206ENST00000487938 KLHL28Q9NXS3 571 aa16.78■□□□□ 0.28
VIM-206ENST00000487938 SLC17A4Q9Y2C5 497 aa16.78■□□□□ 0.28
VIM-206ENST00000487938 SCN2AQ99250 2005 aa16.78■□□□□ 0.28
VIM-206ENST00000487938 CCDC182A6NF36 153 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 FAM183AA6NL82 134 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 BTN3A3O00478 584 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 SLC31A1O15431 190 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 DNAJB6O75190 326 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 EML2O95834 649 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 IGFALSP35858 605 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 ATP6V1E1P36543 226 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 ERVK-21P61565 698 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 ZNF155Q12901 538 aaPredicted RBP16.77■□□□□ 0.28
VIM-206ENST00000487938 ASAH1Q13510 395 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 AGERQ15109 404 aa16.77■□□□□ 0.28
VIM-206ENST00000487938 ZNF628Q5EBL2 1059 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms