RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	ATP5D	P30049	168 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	RPA3	P35244	121 aa	Predicted RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	GRIA1	P42261	906 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	BDKRB1	P46663	353 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	NPY2R	P49146	381 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	ADAR	P55265	1226 aa	Known RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	ZNF33B	Q06732	778 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FASTK	Q14296	549 aa	Known RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	OASL	Q15646	514 aa	Known RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	C3AR1	Q16581	482 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	NDUFA9	Q16795	377 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	MPEG1	Q2M385	716 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	HKDC1	Q2TB90	917 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	CCSMST1	Q4G0I0	132 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	ACER2	Q5QJU3	275 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	OTUD3	Q5T2D3	398 aa	Predicted RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FAAH2	Q6GMR7	532 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	SPNS3	Q6ZMD2	512 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	NEK10	Q6ZWH5	1172 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PEX26	Q7Z412	305 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	CPEB2	Q7Z5Q1	589 aa	Known RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PCGF5	Q86SE9	256 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	LDB1	Q86U70	411 aa	Predicted RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	SYCE1	Q8N0S2	351 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	CSNK1A1L	Q8N752	337 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	HORMAD2	Q8N7B1	307 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	ACBD4	Q8NC06	268 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	MDS2	Q8NDY4	140 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PPHLN1	Q8NEY8	458 aa	Known RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	OR9A1P	Q8NGU1	263 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	M1AP	Q8TC57	530 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	MCOLN3	Q8TDD5	553 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PHF10	Q8WUB8	498 aa	Known RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	SKA2	Q8WVK7	121 aa	Predicted RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	RERG	Q96A58	199 aa	Predicted RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	REXO5	Q96IC2	774 aa	Known RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	GPR137	Q96N19	417 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	BIRC8	Q96P09	236 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PANX2	Q96RD6	677 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	CYTH2	Q99418	400 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	EBNA1BP2	Q99848	306 aa	Known RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	ACAT2	Q9BWD1	397 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	HDHD5	Q9BXW7	423 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	DRC3	Q9H069	523 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	CHRAC1	Q9NRG0	131 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FAM114A2	Q9NRY5	505 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	TREX1	Q9NSU2	369 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	MARCH4	Q9P2E8	410 aa	Predicted RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	STOX2	Q9P2F5	926 aa	Predicted RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	C19orf25	Q9UFG5	118 aa	Predicted RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	MEMO1	Q9Y316	297 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	EML6	Q6ZMW3	1958 aa		3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	MAP1A	P78559	2803 aa	Predicted RBP	3.68	□□□□□ -1.82
SNRNP40-205	ENST00000486941	NIPBL	Q6KC79	2804 aa	eCLIP	3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	CSMD2	Q7Z408	3487 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FREM3	P0C091	2139 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	KCNE1B	A0A087WTH5	132 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941		A0A0U1RQJ8	604 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	KRT87P	A6NCN2	255 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FAM90A18P	A6NE21	464 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FAM90A16P	A6NEW6	464 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	AGAP5	A6NIR3	686 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FAM90A9P	A6NNJ1	464 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	ARHGEF33	A8MVX0	844 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FAM90A5P	A8MXJ8	464 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	NPIPA5	E9PKD4	350 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	C19orf84	I3L1E1	186 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PIP5K1B	O14986	540 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PFDN6	O15212	129 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	DNPH1	O43598	174 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	ASNA1	O43681	348 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PSIP1	O75475	530 aa	Known RBP	3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	VAPB	O95292	243 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	NSA2	O95478	260 aa	Known RBP	3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	IFNB1	P01574	187 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	CAT	P04040	527 aa	Known RBP	3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	APRT	P07741	180 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	SP1	P08047	785 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FAM90A15P	P0C7V4	464 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FAM90A14P	P0C7W9	464 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	IL10	P22301	178 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PRPH2	P23942	346 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	NMBR	P28336	390 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	EEF1D	P29692	281 aa	Known RBP	3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	FMO4	P31512	558 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	AMT	P48728	403 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	HSPA7	P48741	367 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	EFNA3	P52797	238 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PNLIPRP1	P54315	467 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	EIF3B	P55884	814 aa	Known RBP	3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PMP22	Q01453	160 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	PTK6	Q13882	451 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	OR1C1	Q15619	314 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	EXT1	Q16394	746 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	MEP1A	Q16819	746 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	SYT16	Q17RD7	645 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	TYSND1	Q2T9J0	566 aa		3.67	□□□□□ -1.82
SNRNP40-205	ENST00000486941	KLHL38	Q2WGJ6	581 aa		3.67	□□□□□ -1.82

Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms