RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SMIM23A6NLE4 172 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 FADS1O60427 444 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 RCBTB2O95199 551 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 UROSP10746 265 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 TCEA1P23193 301 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 PRPH2P23942 346 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 CHMP24386 653 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 DPP4P27487 766 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 NTSP30990 170 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 DAZAP2Q15038 168 aaPredicted RBP17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 CYP27C1Q4G0S4 372 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 CFAP157Q5JU67 520 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 SH2D4BQ5SQS7 431 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 AAGABQ6PD74 315 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 CDC20BQ86Y33 519 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 UBLCP1Q8WVY7 318 aaPredicted RBP17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 WNT2BQ93097 391 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 RMND5BQ96G75 393 aaPredicted RBP17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 EGLN2Q96KS0 407 aa17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 CCM2LQ9NUG4 571 aaPredicted RBP17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 DDX18Q9NVP1 670 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 RPH3AQ9Y2J0 694 aaPredicted RBP17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 WBP11Q9Y2W2 641 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-206ENST00000473405 NPIPB8E9PQR5 432 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 HCRTR2O43614 444 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 SCO2O43819 266 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 CRCPO75575 148 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 CPA3P15088 417 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 CCT5P48643 541 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 DSCR4P56555 118 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 MRPS22P82650 360 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 GAB1Q13480 694 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 LIPMQ5VYY2 423 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 KIF18BQ86Y91 864 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 GCNT2Q8N0V5 402 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 OR2M3Q8NG83 312 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 INTS12Q96CB8 462 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 ELP4Q96EB1 424 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 FOXC2Q99958 501 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 LMF2Q9BU23 707 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 PPCSQ9HAB8 311 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 RRAGDQ9NQL2 400 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 GALNT8Q9NY28 637 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 PPP4R1LQ9P1A2 415 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 ABCG2Q9UNQ0 655 aa17.01■□□□□ 0.31
CCDC88B-206ENST00000473405 ZANQ9Y493 2812 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 TNFSF12-TNFSF13A0A0A6YY99 330 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 COPEO14579 308 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 TNFSF13O75888 250 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 TGM6O95932 706 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 IFI6P09912 130 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 EPXP11678 715 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 KRT4P19013 534 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 PCLAFQ15004 111 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 C4orf33Q8N1A6 199 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 OR4K17Q8NGC6 315 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 OR2T11Q8NH01 316 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 LINC01560Q8TB33 94 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 DTNBP1Q96EV8 351 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 METTL2AQ96IZ6 378 aaKnown RBP17■□□□□ 0.31
CCDC88B-206ENST00000473405 FCRL1Q96LA6 429 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 RBM24Q9BX46 236 aaKnown RBP17■□□□□ 0.31
CCDC88B-206ENST00000473405 DSN1Q9H410 356 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 TUBB1Q9H4B7 451 aa17■□□□□ 0.31
CCDC88B-206ENST00000473405 FAM120CQ9NX05 1096 aaKnown RBP17■□□□□ 0.31
CCDC88B-206ENST00000473405 SEC22BO75396 215 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 IL33O95760 270 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 SLC18A2Q05940 514 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 BCL2A1Q16548 175 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 DECR1Q16698 335 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 ANKRD26P1Q6NSI1 321 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 ZNF551Q7Z340 670 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 LUZP2Q86TE4 346 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 GRAMD2AQ8IUY3 354 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 C10orf107Q8IVU9 208 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 CCDC63Q8NA47 563 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 GFM2Q969S9 779 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 CIDECQ96AQ7 238 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 ZNF764Q96H86 408 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 LRTM1Q9HBL6 345 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 Q9N2J8 555 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 C1orf109Q9NX04 203 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 PLEKHA6Q9Y2H5 1048 aa16.99■□□□□ 0.31
CCDC88B-206ENST00000473405 A0A1W2PNV4 684 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 SDC1P18827 310 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 MAP3K8P41279 467 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 CLDN15P56746 228 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 HSPB3Q12988 150 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 STX5Q13190 355 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 GANABQ14697 944 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 ZNF385BQ569K4 471 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 PAMR1Q6UXH9 720 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 RNF165Q6ZSG1 346 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 Q6ZSR9 355 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 GOT1L1Q8NHS2 421 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 HOXB13Q92826 284 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 CCT7Q99832 543 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 GATA5Q9BWX5 397 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 ACBD3Q9H3P7 528 aa16.98■□□□□ 0.31
CCDC88B-206ENST00000473405 MED11Q9P086 117 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms