RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 GLIPR2Q9H4G4 154 aa15.02■□□□□ -0
CCDC28B-204ENST00000469003 PPCSQ9HAB8 311 aa15.02■□□□□ -0
CCDC28B-204ENST00000469003 TNFRSF12AQ9NP84 129 aa15.02■□□□□ -0
CCDC28B-204ENST00000469003 PPP4R1LQ9P1A2 415 aa15.02■□□□□ -0
CCDC28B-204ENST00000469003 MED12LQ86YW9 2145 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 MPDZO75970 2070 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 MAP1AP78559 2803 aaPredicted RBP15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 UPK1AO00322 258 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 HCRTR2O43614 444 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 SCO2O43819 266 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 GOSR1O95249 250 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 SHBGP04278 402 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 IFI6P09912 130 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 UROSP10746 265 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 B3GALT5-AS1P59052 145 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 EEF1A1P68104 462 aaKnown RBP15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 GAB1Q13480 694 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 BCL2A1Q16548 175 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 SH2D4BQ5SQS7 431 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 EEF1A1P5Q5VTE0 462 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 NOXRED1Q6NXP6 359 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 FADS6Q8N9I5 356 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 LINC01560Q8TB33 94 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 INTS12Q96CB8 462 aaKnown RBP15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 AMDHD1Q96NU7 426 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 RBM24Q9BX46 236 aaKnown RBP15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 PIGMQ9H3S5 423 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 DDX18Q9NVP1 670 aaKnown RBP15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 OXSMQ9NWU1 459 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 ABCG2Q9UNQ0 655 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 RPH3AQ9Y2J0 694 aaPredicted RBP15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 CCL27Q9Y4X3 112 aa15.01□□□□□ -0.01
CCDC28B-204ENST00000469003 C17orf51A8MQB3 221 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 NPIPB8E9PQR5 432 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 FADS1O60427 444 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 CPA3P15088 417 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 TCEA1P23193 301 aaKnown RBP15□□□□□ -0.01
CCDC28B-204ENST00000469003 PRPH2P23942 346 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 DNASE1P24855 282 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 KIAA0040Q15053 153 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 ZNHIT3Q15649 155 aaPredicted RBP15□□□□□ -0.01
CCDC28B-204ENST00000469003 DECR1Q16698 335 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 PLXDC2Q6UX71 529 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 GRAMD2AQ8IUY3 354 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 CCDC63Q8NA47 563 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 CHDHQ8NE62 594 aaPredicted RBP15□□□□□ -0.01
CCDC28B-204ENST00000469003 OR2M3Q8NG83 312 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 UBLCP1Q8WVY7 318 aaPredicted RBP15□□□□□ -0.01
CCDC28B-204ENST00000469003 ELP4Q96EB1 424 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 LMF2Q9BU23 707 aaKnown RBP15□□□□□ -0.01
CCDC28B-204ENST00000469003 DSN1Q9H410 356 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 Q9N2J8 555 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 SDHAF3Q9NRP4 125 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 MRTO4Q9UKD2 239 aaKnown RBP15□□□□□ -0.01
CCDC28B-204ENST00000469003 PLEKHA6Q9Y2H5 1048 aa15□□□□□ -0.01
CCDC28B-204ENST00000469003 TTC36A6NLP5 189 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 SLC28A1O00337 649 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 COPEO14579 308 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 SEC22BO75396 215 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 IL33O95760 270 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 PEPDP12955 493 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 CPA2P48052 419 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 GANABQ14697 944 aaKnown RBP14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 LIPMQ5VYY2 423 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 FBXW10Q5XX13 1052 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 CLEC6AQ6EIG7 209 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 LUZP2Q86TE4 346 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 GCNT2Q8N0V5 402 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 LRRN4CLQ8ND94 238 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 EGLN2Q96KS0 407 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 TMUB1Q9BVT8 246 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 C12orf65Q9H3J6 166 aaKnown RBP14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 C1orf109Q9NX04 203 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 FAM120CQ9NX05 1096 aaKnown RBP14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 GALNT8Q9NY28 637 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 FLRT3Q9NZU0 649 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 MID2Q9UJV3 735 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 AKAP6Q13023 2319 aa14.99□□□□□ -0.01
CCDC28B-204ENST00000469003 SMIM23A6NLE4 172 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 RGS14O43566 566 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 TGM6O95932 706 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 CRHP06850 196 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 HK1P19367 917 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 CLK3P49761 638 aaKnown RBP14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 PSMD4P55036 377 aaKnown RBP14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 DIO3P55073 304 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 SLC18A2Q05940 514 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 PAMR1Q6UXH9 720 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 RNF165Q6ZSG1 346 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 CHMP1BQ7LBR1 199 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 P4HA3Q7Z4N8 544 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 CAMKMTQ7Z624 323 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 TGIF2LYQ8IUE0 185 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 EPS8L3Q8TE67 593 aaKnown RBP14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 MBD6Q96DN6 1003 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 ZNF764Q96H86 408 aaPredicted RBP14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 FCRL1Q96LA6 429 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 DACH2Q96NX9 599 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 YIPF4Q9BSR8 244 aa14.98□□□□□ -0.01
CCDC28B-204ENST00000469003 PTGES2Q9H7Z7 377 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms